RNA id: XM_039799528.1


Basic Information

Item Value
RNA id XM_039799528.1
length 7255
RNA type mRNA
GC content 0.52
exon number 25
gene id camta1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12924458 ~ 13221338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAAGTTCGCCTCGGTCGGACCGACTCGCCGCTTGCTCCTCCTGTCCCTCCTCGTGCTGTCCTCGCCGTGCACGCGCGTGGTACCCACGGtcgtgaggaggaggaggatgttgcgCGTGAAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGGACTGAAGAAAGTTCGTAATCCGGATCGAATGTACAGATCAGCAGTGTGTTATGCTGGCCATGGTCCACCTAAGACTATCAGTGATGACACAGAGACGAACAATGAACATGGACATTTGAAAATATACCTGCCCAAGAAGCTGCTTGAATGTCTACCAAAGTGCACCTCGCTGCCAAAGGAGAGACACCGGTGGAACACTAATGAGGAGATCGCAGCTTACTTGATAACATTTGAAAAGCATGAAGAATGGCTAACGACATCCCCTAAAACAAGGCCGCAGAATGGGTCGATGATATTGTACAATAGGAAGAAGGTGAAGTACAGAAAGGATGGCTACTGCTGGAAGAAGAGGAAAGACGGGAAGACGACACGGGAGGATCACATGAAGTTGAAAGTGCAGGGAGTTGAGTGTCTGTATGGCTGCTACGTCCACTCCTCCATTATCCCCACCTTCCACCGTAGGTGCTACTGGCTGCTCCAGAATCCTGATATTGTTCTCGTCCACTATTTGAATGTTCCAGCTATTGAGGATTGTGGGAAACCATGCGGTCCAATTCTGTGCTCCATCAATACAGACAAGAAGGAGTGGGCCAAGTGGACGAAGGAGGAGCTGATCGGCCAGCTCAAGCCCATGTTTCATGGCATCAAGTGGACTTGCAGCAATGGGAACAGCAGCTCTGGCTTCTCAGTGGAGCAGCTAGTGCAACAGATTCTGGACAGCCACCAAACTAAGCCACCTCCCCGGACTCACAACTGCCTCTGCACGGGCACCCTGGGTGCTGGGAGCAGTGTGCACCACAAATGCAACAGCGCCAAACACCGCATAATCTCCCCTAAGGTGGACCCCCGCTCAGGGGGCTACAGCAGTGCTCACTCTGAGGTACAAAACAACGATGTGTCGGAGGGGAAGACCGAGCACAGTGCCCATGGCGGAGGCAAAAGCTCTGGGGGAGGAGGCGGAGGGGGCAGTGCCAGGGAGAAACGCAATGGCAAAGTCCACAAGCCCGTCCTGCTGCACCAGAACAGCACAGAGGTGTCATCCACCAACCAGGTTGAGGTCCCTGACACCACACAGAACTCCCCTGTGTCCATCAGCAGCGGCCTCAACAGCGACCCAGACATGGCTGACAGCCCCGTGGTGACAGGGATGAGCCACGTGGCCTCTGTCATGTCTGGCCTGTCCCAGAGTGTCTTTATGTCTGAGGTCACTGGAGACCCTGTCTACAGCATGTCTCCAACCGGGGGTCCCAACACTCACCTGATGGGTGCAGATGCCACGTCACAGGGCTTGGTGCTGTCTGTGACCTCTGATCGTCACAAATTTGCCTTCCCCAGTGGAGGAGTAGGGGAACCTGGGACTACCGCGGCAGGAGACAGCCTGGCCATGCTGTCTTCAGCTGGGGTTTCTGAGGAACTGGTGCTGTCCAGCAGTCTGGACGCTGGAAGCATCAAAATCCCAGAGACCAATATGAACTTTGACCCGGACTGCTTCCTGAACAACCCCAAACAGGGCCAGACCTATGGAGGCAGTGCAATGAAGACGGAGGGCAACTCTTCCTCAACCTCATCTTCCTCCGGTGGCAGTAGTTGCACCAACGGCAGTCTGCAGCGCTCCCCTCCCATGTCAGACAATGGCTACACCTTCAGCTCAGCTTTGGTAAAGAATATCAAGACAGAAGACACATCCTTTGAGCAGCAGCTGGCCCAGGAGAGTGGCTACCAGGTGGGGCCAGTAGTGAACTGTAGCAGCGGGGTGTCTGTGTCATCTGGTGCTGGTTCAGGCCAGGGTAGCCTTACTCTGACAGCAGCAGGCTCCCTGCTTCCTTCTGGTGGGGGGCTGAGTCCCAGCACCACCCTGGAGCAGATGGATTTCAGTGCTATTGATGCCAAGCAGGACTATACTTCCAGCGCTACCACCGTGAGCTATGGTCAGGCCATGTCCAGTCCTCACATGCAACACCAGAACCGTTCACCCAGCTTCTTCCTCCAGGATTCTTCTCAGACCGGCCAGGCCCAGCAGGGGAGGCCCAGCATGGGCCAGAAAACACATTTGATGGAGCACAACTCCCATGACTCTGGGGCTTATATGGGGCTGCAAGTGGTGAAGACGGACTCCCCTGGCAGCAACGGCCAcctccaccatcaccaccagGCCCACCAGAGCCAGCACAGGGCCAACTGCAATGGAGGCTCACCCACAGAGGGGCCTGGCCAGGCTGGCTCTCTCCAGCTGCTACAGTACCAGGGGAGCTTTCCTGGGCTGGGCACTGAGCATGAGGAGGTGGTGGGTCTAGAGCAACCGGGCAATGTCAATTCAGCTCAGGCCGGAGCCACTGAGAACGGAGCTGATAATCTACTCAAGCCAGGAGACCACATTCAGGCCTGTGGTGCAGGAAACGGCGAGGGCGCAGAGCACTACCTGCAACAGGCCTCGGACGGGGGCGGAGGAGGGACTGGAGGTGCAGGAGAAGGAGTAGCAATTCACaatggcaacaacaacagcgaTGGCAGCAACCACtcccagcagcaacagcagctgcagcctCTCCTCCAAGGCACGAGTATGGTCCAGGGACTCTACAACGCTGTCGGAAGCCACCAAGGCCTGGGTGGAGCGGCCAGTAACGGAGGAGCAGGAGGGACCGGCATGGAGATCAGTCTGGATCACTTTGACATCTCTTTTGGTAACCAGTTCTCTGACCTCATCAATGACTTCATCTCAGTGGATGGCAGTGGAGCCACCATGTCAGCTGGAGGGGCCCTATATGCTCACCAGCTTGTCACATCCCACAGTTCTGATAGTCAGAACACAGCTGGTGGGGCCCCCCAGCAGGGCCAGGAAGATGGAGGGGCCAGGGGCTCTGGCTACAGCCCCTCAGAGCTCTGCCTTCAACCCTGCTGCAGCCCCCAGTCTCTGAGTGGAGGGGCTGGAGCAGCGGGAAACGCAGGAGATCAAGGCTCATTGTCCTACATGAATGTAGCAGAGGTGGTGTCTGCAGCTGTAGCCCAGGGGGCTCTGGGGATGCTTCAGGCCACGGGCCGGCTCTTCATGGTCACTGACTACTCCCCTGAGTGGTCCTACCCCGAGGGTGGAGTTAAGGTGCTGATCACTGGGCCCTGGCAAGAGGCCAGCTCAAACTACAGCTGTCTGTTTGACCAGATCTCAGTCCCAGCTTCTCTCATCCAACCAGGGGTGCTGCGCTGCTACTGCCCAGCGCATGACACAGGTCTGGTGACGCTGCAGGTGGGTGTCAGTAACCAGATCATATCCAACTCGGTGGTGTTTGAGTACAAGGCCCGCGCTCTTCCTTCACTGCCATCATCTCAGCACGACTGGCTCTCGCTGGATGATAACCAGTTCAGAATGTCTATCCTGGAGCGCTTGGAGCAGATGGAGAGGAGGATGGCAGAGATGGCCAGCCACCAGCAGTCGAGCAgaggaggaggaggaggaggaggaggaggggggggaggcggaggaggaggaggaggcaacAACAGCCAGTCACAGTGTTTATCTGGTCAGACGCAGGCCAGCAGCTCCTTTGAGAGTCGTGTCGTCGTGGTCTGTGAGAAGATGATGAGCAGAGCTTGCTGGGCCAAGTCCAAACATTTAATCCACTCCAAGACCTTCAGAGGCATGACACTCCTTCACCTGGCTGCAGGCCAGGGCTACGCCACCCTCATCCAGACACTCATCAAGTGGCGCACCAAACATGCTGATAGTATTGATTTGGAGTTAGAAGTGGACCCTCTCAATGTAGATCACTTCTCCTGCACGCCTCTGATGTGGGCATGTGCACTGGGTCACCTGGAGGCAGCAGTGGTCCTGTATAAATGGGACAGACGTGCCCTAGCTATCCCAGATTCTCTGGGTCGCTTACCCCTCTCAATTGCCCGATCTCGTGGCCATACCAAATTGGCCGAATGTCTAGAGCAGCTACAAAGGGAAGAGCAGCAGCCACCAGCCCCTCTACCACCTGCAACTCGCATGTCTTTCTCCCCAGCCCCCGACACCCCCACTACAGACAGCTGGATGGTCAGCTGGGCAAACAACAGTGGAGTAGCACCCAGTGGCAAGAAAGGGGGTCCTGCCACCACTACAACCACATCCAGCACCACAAGCCTCAATCCAGactTAAGGAGGCCCAGGTCAGAGCCCTCCAACTACTACAGCAGCGAGGGCCAACGAGACCTCCCACTAGCTAAAAAACATAAACCCAACCCAGAACTGTTTCAGATTCGGCCTGACAAGGCCATGTCTGTTCCTCTAAGCCTGGAGCAGCAACAGCTCCACAAGCTGTCCTCTAGCCCCAAGAGCCTATCCTCAGAGGGACTGAGCTCAGACAAAGGCCTGTCTACAGGAAGCAGCACAGGGACAACCAGATGGACCTCCAGACAGAGTTTCTCCAGCAGCGGCATGGGGAGGAAGGCGTTGGGGGTCAGTGGAAGCAGCAGCCTGGGGAAGGAGAAACTGGTCAACCGGTTGCGTCAGCGGGAACAGCTAGGCATGCTGGTGATGGCTGACAGAGAAATGGCTGATGCAGAACTGTTATCCTATCGGGAAGATCTGGAGAACCAGGACTGTCTCACACAGATGGATGACCTGCAGGCAAATATGATGACTCTGGCAGAGCACATCATTGAAGCAACGCCAGAGAGAATCAAAAGGGAGAACTTCACGACAGTGGACTCTGTGCCCGTAGACACGTCAGGGGTCAGCAACACCATGAACTGGCTGGCCAACTACCTTGGAGATGTGGAACAGCTGCCGAGCATCATACACCTACGATCTCTGTATAATGAAACCTTGACCCCCTCGTCCAACCCCAGCCTCAGTCCTGGGGGGTCTCCACTGAGAGAGGGGCCCCTGGAGAGGTCTACACTCCCATCCCCAGCTGACTGGAGTGAGTTCATCAATGCCTCCAACAGCAAGGTGGAGCGAGACCTGGCCCAGCTGACTCTGTCAGATCCAGAGCAGAGAGAGCTGTATGAGGCCGCCCGCCTAGTCCAAACTGCCTTCCGCAAGTACAAGGGGCGGCCGCTCCGAGAGCAACAGGAAGTAGCTGCTGCTGTTATTCAACGTTGTTACAAGAAATACAAACAGCTAACATGGATAGCCttgaagTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAGTTCCGCAGCTACCACGAACAGAAGAAGTTTCAGCAGAGTAGGAGGGCTGCCATGCTCATTCAGCAATACTACCGCAGCTACAAGGAGTTTGGCAGGCTGAAGCCCAACCACCGCGGGGCTGCTGCCGCCCTCATGCAGCACAAACTAAGAGGTAGTCTGCTCACAAAGAGGCAGGATCAGGCTGCCAGGAAGATCATGAGGTTCCTACGTCGCTGCCGCCACAGCCCCTTGATGGACCATAGACTGTTCAAGCGGGGTGAAAGAATTGAAAAGGGCCAGGGAACATGAGACCCCTCAGAAGAGCCCCCTCACGATGTGACATCACTCTCTTGACTccgcttttcttttttgtttgtacCCGAGAGATTTTACAAGAGAAATGaaagacgaaaaaaaaaaaaaaaaaacatcaatgcaAGCACTGCAATTATTACTACTACTGCAGTGTTACTGGTTCAACTACTATTACATGTACAACAGCATTTTTTCACATATCTTTTCTTTCCACTGACTTGATTTGGTCGGAGAGTGGCAACTTTTACGGGATTATAAACTAAAAGGGTCAGGGTAGGGGGGGTGCAGAACATTTGCTTTATGGcattttttgcactttttcatGGATTGCTTTGTCTTTTTTGAATATGAAGAGCCGAAACGCAGGACATGCCTGAGGAGGTCTGTCAAACACAAGGACCTCGAGAGACGTAAATTAAGGCTTCTGCAGAAGATCTCAGAGGATAGGGAGACCAAGCAGAAACACTCTGGGCTCGAATTATATTTCATACGTTTTTACGTGACCAATCAATTCATTTGaagaagtttttcttttctttttttaaccaaataaaTTGGTCACCCACACTCCCACTTCTATCCACTGCTGTAGATGATATGATATTCAATTTAGCTCAACAATTCCAGCTGTCCCACTGTGCTCTACCCCACCAGTCTGCCCACACGGGTGGAGCTACAAATGAATGTAGTCCGGGGGTTTAACCATGCAGAAGCAAATGGGGGataaaatatttctgttttgccatttctttttgaaaaaaagaaaaactatgcTTTATCAGATATATTGTCACTTTATTACTTGAATTTGTTCCATACTGTCCAATGTATTTGTTCCATCATGTCCAATGTATTGGTGATCTGTATCTTCAGACTCTATGTTGTTGAACCCTACCAAGAAAGAATGCATGACTTCTTGGCAAGAAAAGTCTTTGCTTGTGTGCTTATGGTCTAGTCTTTCAGCCTATCCtctgattttctttttgtttccatCTTCTCCCCCATAACTTCTATCATCTCAGTAATGAAGCTATGCCTGTATTGTCCTGTTtcttttttgattttgttttcgtTTTGCTTCGTTCAGTTGATTGATCCTCTGAATCCTAACAAGAGAAAAGTACTTGCCTATTTTGTGTTGTAATGGTTATGGTCATGCAGGTTATTATTGTTCTTTTTAAACGAACTTCAGAGCCTGTGAAGGCTTTTGAGGGGAAGATCACATACATTGCCTTGACGTCTTAGAGATTCTTTGAGGGGTCCCTAAGCTTGTCCCAAAATAGGGGTTTGACAAATCCATATTTTTGACAATTGAGCGATTTCTGTATATAAAGAAGGCTGAAAGTGcgtaggaaaaaaaacatttacccAACGGGGATTGTATTTTagaaatatattattttattcattaaaaatgggtcaaaaaCAGGTAtgagacaaaaacagaatatttgTATAGTTTTGTTTGAATGCCTAAGAAGTATGGTTGTATTGTTTGTAAATAGTGTAAATACCTGGGATAAAGATGAGCTATGTGCATGAAAAGTATGAACAGAgtcaaaaggggaaaaaaaaaaacaaaagcagtagTGGCTATGCTCTGTAAAATTAAAACTATTTCACTATta

Function

GO: NA

KEGG:

id description
K21596 CAMTA; calmodulin-binding transcription activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65959 lncRNA downstream 130 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 85326 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 145138 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 153039 12768820 ~ 12771419 (-) True G49372
TU65826 lncRNA downstream 220353 12700429 ~ 12704105 (-) True G49307
TU66015 lncRNA upstream 60649 13281987 ~ 13284250 (-) True G49447
TU66052 lncRNA upstream 87179 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 87179 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 87179 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 133779 13355117 ~ 13357805 (-) True LOC120558463
XM_039799523.1 mRNA downstream 9375 12896793 ~ 12915083 (-) False ccdc187
XM_039799520.1 mRNA downstream 9377 12896793 ~ 12915081 (-) True ccdc187
XM_039799524.1 mRNA downstream 10187 12896793 ~ 12914271 (-) False ccdc187
XM_039799522.1 mRNA downstream 10193 12896793 ~ 12914265 (-) False ccdc187
XM_039799521.1 mRNA downstream 12677 12896793 ~ 12911781 (-) False ccdc187
XM_039799633.1 mRNA upstream 14878 13236216 ~ 13237110 (-) True dhfr
XM_039799631.1 mRNA upstream 21836 13243174 ~ 13249562 (-) True LOC120558584
XM_039799629.1 mRNA upstream 23425 13244763 ~ 13249562 (-) False LOC120558584
XM_039799630.1 mRNA upstream 23425 13244763 ~ 13249559 (-) False LOC120558584
XM_039799632.1 mRNA upstream 23425 13244763 ~ 13249542 (-) False LOC120558584
TU65695 other downstream 485733 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 532787 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 701456 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 755249 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 796033 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 31074 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 919042 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1310786 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1624000 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1624000 14845338 ~ 14853817 (-) False G49845

Expression Profile