RNA id: XM_039799634.1


Basic Information

Item Value
RNA id XM_039799634.1
length 2040
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC120558587
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13250986 ~ 13253608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCCTACGCAAATAAACATTGGTGAAACCCCGTGAACCACCCAAATGCACAACCTTACGACATGGGAGAGATAAGAGGAAGCGATATTGCACACTTCTGTTTCACATTGTTCTTTCCATTCCCATCATAAAGATCGCAGGGATGTCTCTTGGCTTCTTCAATGctctgtgtctcTTTTGGCTAACAAAGCATGCAGTGGACTCAGTCCAGTTGTCGGCTCCAGAGGTGGTAACAGGAGCATACGGGGCATCTGTGACTGTCTCTTGTCAGTACGATCTTCAATTCAAAGAATACACAAAGTACTGGTGCAAAGGACCGGTCTATGAGCTGTGTAGCAAAGTGGTGACAACACCCAGGGGGCAACATAGTGAGAGAAGCTCCATTGCTGATGATAAGGATGCAGGAGTCTTCACTGTGATTATGACTTCTCTCAAAGAAAGTGATCAGGGGATGTACTGGTGTGTCATCGCCAGACCTGGAAGGAACATCTACACTGGTGTCAGGCTCCGCGTCTCCCACACAGTGATAACCTCAACAGCCACTCCATTACTGATACTGGAACAAGATGAAATAAGTTGGTGGGCGACTCTGCGTTGGATCCtctttattttaatgttgtgtTGTTTGGCATCAACACACTTGGCTGTGTGGAGGACAACGGCTACAAGGAAAATACAGCTGCAACAACTATTTCAACTCAAACATCTATGATTGAAAGTCACAGGTGAATTATAAACTAATTTATACTGGGGGCTACAAAACAAATCTTCCAGTGGacattctgtctgtgtgtgaattaTACTAAGAAATAAACCAAGTGGAAAAAGTGGCTTTCGGCCTCTTTTTTCTTGGTATCTAAATGATTAAAACCTGATTAATTTCGGTGCCAGAGCGTAAGATAACTTTGGGCCCAACTTTTGAATATCCAATCATCTTAAAGATTAGCACCTCTGGAGAAGTGAGGCTCTTGGCTTTCATCTAATTTATTTGCAGATGTTATATGGACCGTCATAGAGGttgactttttaaatttaacCACAAGTTTCTAGTGGTTTTATAAAAATCTGAAAGTaatgctggaaaaaaaatacCTTCAGGCATAAAGACACAAAAGTTGAATGGTGGTGATTTGCCACCAATTTTTTTGTTAATCTAAGAAAGGATTACAGAGGTATATATGATTTCTTAGGATTATTATTATGGGACACCTACAGCTGACATGGTATTTTTCTGTTCATGCAAACTGGGATTTCTTGTTACAATCTGTCACAGTCCAGCACTTAAACTGGGACAAAAACAGGAGGCATACATAACTAATAAAGTAATTCATTTACtacaaaaataatcaaaacaaGTCCAACAAATAGATGGCAGGAAGCTGTAATGTCAGTAGGGTAGGGAGAGGATGAGCAAAAATATGTTGCATGGAATGCTGTGCTGTAACAACAAGGAACAGAACCCAAAGGCCACAAAACAGAGGTGCTTGAGGTGAGAAAATCTTGGCAAGGACACCTGGCTGAGGTGTGTCCCATGCCACGGATTACCCTCCAACAGCTCTGCAGCcctgaagacagaaagcaaaGCAACAGAAAAGCACACCAAGCAGAGGGGCTGTCCCAAATCAAAGCTTAATTATAGTCGAATTCAACCGAAAATGTGACACATCAAATTCTCTAAAAGAGGCAGTGGTGGGGGCGGCCTACAGCTCACCTTGTAGAGCgcgcgccccatgtaggctcagtccttgccagCGGCCCATACTCGAATCCAAcctgaggccctttgctgcatgttgtagcccctctctctcccccatttcctgtctctcttcagCTGATCTAAATACAGGGAAAACCCTAATAAAAACATCTTCTATCAGCGTGGAAGAGGCAGTGGTGATTTGTGATATTTGTCAAGCAGATTTTATTACCCTGCTGGTTGTAGCTGCACGATGTTGGACACTTATGTCTGCTGCTTTTAGAGAACAGCATGTATTAACAATTTTATAAGCCACACCTGTACAATGCAATAAACCCTG

Function

GO: NA

KEGG:

id description
K06719 CD300; CD300 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65973 lncRNA downstream 29744 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 326658 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 411854 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 471666 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 479567 12768820 ~ 12771419 (-) True G49372
TU66015 lncRNA upstream 28379 13281987 ~ 13284250 (-) True G49447
TU66052 lncRNA upstream 54909 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 54909 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 54909 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 101509 13355117 ~ 13357805 (-) True LOC120558463
XM_039799631.1 mRNA downstream 1424 13243174 ~ 13249562 (-) True LOC120558584
XM_039799629.1 mRNA downstream 1424 13244763 ~ 13249562 (-) False LOC120558584
XM_039799630.1 mRNA downstream 1427 13244763 ~ 13249559 (-) False LOC120558584
XM_039799632.1 mRNA downstream 1444 13244763 ~ 13249542 (-) False LOC120558584
XM_039799633.1 mRNA downstream 13876 13236216 ~ 13237110 (-) True dhfr
XM_039799635.1 mRNA upstream 5717 13259325 ~ 13262798 (-) True mfsd4ab
XM_039801959.1 mRNA upstream 38906 13292514 ~ 13299992 (-) True LOC120559884
XM_039801960.1 mRNA upstream 38906 13292514 ~ 13296393 (-) False LOC120559884
XM_039801961.1 mRNA upstream 38906 13292514 ~ 13295760 (-) False LOC120559884
XM_039801957.1 mRNA upstream 53980 13307588 ~ 13328250 (-) False LOC120559881
TU65695 other downstream 812261 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 859315 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1027984 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1081777 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 1122561 12126886 ~ 12128425 (-) True G49083
XR_005639168.1 other upstream 886772 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1278516 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1591730 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1591730 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 3027436 16281044 ~ 16283856 (-) True G50217

Expression Profile