RNA id: TU66015


Basic Information

Item Value
RNA id TU66015
length 2124
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G49447
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13281987 ~ 13284250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atGAAGCAAAACGTCCTTTATTGaaaattcaaatgtttaaaaaaaaaaaatacatagacTACATGTACAGTAACACGGAATCACTGAAAAGGTAACATGACATTACACAATGTGGGTTAGGAAATATAAAAGATTTATAGCATTATTTGTAATACATTTGAGAAAATCTGAAGTCTCAACTTAATTTCCATGTTTAGCAAACTACACATATCCATTAGAAAAACATATAGAACTGTAAAACTAGACTTTGAGGTTTGCtcccatacagacacacagtcaaTTATAAAGCAATATGTGCCCCCTGAAGATATCCCAGAACAAGGTCATTATGGTTTGCATcaccaaaaaaaatcaaatgtagAGGATTAAAAAACCCAGAGTTACTCCTGTCCAGAGAGTGCTGGTACATCCTGTGTCTCAGCCTGAAGCAAAAGCCCCTCCTCACTGTCTGACCCTTGGTAAAGACTGTCCAGTAAGGCAACAGATGGACCAAATGAGTTGTCCTCAACACAGACATAAATGAGGTACAGAAGGCACATCACAATAAGGAAGACCAAAATCTGTATCTGAATGGGCACAAGGCGGCGCTCCACCTCTCGTTTTTCCAGGGTCGTGGGACTGACAGGAGTGTCTGGGTATGCATACTGGACAGGTCTCCCTGCTGCACCTTTGATAGGTCTCCGACGAGTAGCGCTGAAATATGACAGAGTATACAAATGTGCCGATAACCCAGTTACAAAACGCCTACCATGTCTTGGTATTTGCTACTATGCAAGTTGTCCATGTGTCAATCACCATTTCTGTACATTTCTTGTACTTCAGATAAATCCTATTCCCATTCAACAACTTACAAAGCTGTGAAGAGTTTTTAATTGTCATGCCGTAATAGTGTTGCTGTGGCACTTACTAGATCCCTGTGGTCGTGGCATCAGTGTTTGGAAACATGTCCTTAAAAGTATCCTTAACAGGCTCCTGAGTAAGCTAGAAAAGAAAGCCAAAATTACTCTCAAAGTGGACCAGagaaaaagataaatatttCCCAGACAGCAGAGTCCCACAGAGACAGAGGCCCAGCAAGTCAGGTAGAAAGGAAGTAAAAGAGTGATTGTTAATGTgatcacaagaaaaaaaagcaactgTTAAATTTAGTGTGTATCATTTTCTAGCTTGGGTTACACATTGTAACACGGACATATGAAAGGAGTTACACAAACAGAGTATCTTATGGTAGACAATGCACACATCCCCCATCAAGTgatatggaataaaaaaaatgtatgatgTATGTGCCTTCATTTTCCATTTATAAGGGGATGCCTTGGGAGTGTAGTACAGGGACTGGTTCTTCATGGTGTCCACAATTGGCATGTCCAGCTAAGGAAAGGAGACGTAACAGATTATAATTTCTGCGGTCTTCATTTCCTCCAGCGAACCTCTCCAACAACTTTAACCACCACCGACATTCAAGCTTAAAGTGTGACTGAACAATGTGAGCACTACTAACCCTGTTGGACCGCGACCAATGTTTCTGCACATTGCTCCCATTCAACTCTATCTCAGTGTCTGAGCTAGTCGAGAGTGACCTGCGACTCTCCATCTCCTCAACCATTCGAGTGATGCTGAAGGCCTGAGAGGACATTGATGATTCACCATCGGGCATAACTGATTGTGATCCAGATGGAAACTGCAAGGATTAGTATTATCATGTTTACAACAACATAGACATGTATTATTCGTCACACAATCTACACACCAGTGAGATACCATGCCCATCACTGTAAaacaacaggaaaaaaaaaaaaaaaacactggtggcTTGAGAAGGACACACAATATAGTTACAGTCCAAGCAAGGAATGCAGAGAATTTTAAATCCACAGGAGAAGTGAAATGAAACCAGCCTACCCCTGATCCTAATCCCGAGTGCTGATCTACAGAGGATGCTCTACTAATTCCTACGGGAATCTGTGAGCAAGGAGGCCGACTCTGCTCCGATGATTCTATCGCATTCCCTGAATTCCACTTGGGACTAGGTTCACGGTTTCTAGAAGCACGAGCATGCTACAAAAGGCCAacccaatgaaaaaaaatgaagaagaaaaaacacatcagtgtCTCCTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65973 lncRNA downstream 60745 13206367 ~ 13221242 (-) False camta1a
TU65959 lncRNA downstream 357659 12921001 ~ 12924328 (-) True G49407
TU65931 lncRNA downstream 442855 12837520 ~ 12839132 (-) True G49384
TU65921 lncRNA downstream 502667 12775917 ~ 12779320 (-) True G49374
TU65916 lncRNA downstream 510568 12768820 ~ 12771419 (-) True G49372
TU66052 lncRNA upstream 24267 13308517 ~ 13310312 (-) False LOC120558437
TU66059 lncRNA upstream 24267 13308517 ~ 13312729 (-) False LOC120558437
TU66061 lncRNA upstream 24267 13308517 ~ 13311160 (-) True LOC120558437
XR_005639127.1 lncRNA upstream 70867 13355117 ~ 13357805 (-) True LOC120558463
XR_005639126.1 lncRNA upstream 82013 13366263 ~ 13368373 (-) True LOC120558462
XM_039799635.1 mRNA downstream 19189 13259325 ~ 13262798 (-) True mfsd4ab
XM_039799634.1 mRNA downstream 28379 13250986 ~ 13253608 (-) True LOC120558587
XM_039799631.1 mRNA downstream 32425 13243174 ~ 13249562 (-) True LOC120558584
XM_039799629.1 mRNA downstream 32425 13244763 ~ 13249562 (-) False LOC120558584
XM_039799630.1 mRNA downstream 32428 13244763 ~ 13249559 (-) False LOC120558584
XM_039801959.1 mRNA upstream 8264 13292514 ~ 13299992 (-) True LOC120559884
XM_039801960.1 mRNA upstream 8264 13292514 ~ 13296393 (-) False LOC120559884
XM_039801961.1 mRNA upstream 8264 13292514 ~ 13295760 (-) False LOC120559884
XM_039801957.1 mRNA upstream 23338 13307588 ~ 13328250 (-) False LOC120559881
XM_039799445.1 mRNA upstream 24110 13308360 ~ 13309625 (-) False LOC120558437
TU66001 other downstream 28515 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 843262 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 890316 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1058985 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1112778 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 856130 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1247874 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1561088 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1561088 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2996794 16281044 ~ 16283856 (-) True G50217

Expression Profile