RNA id: XM_039799478.1


Basic Information

Item Value
RNA id XM_039799478.1
length 1527
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120558461
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13406785 ~ 13413178 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catgtatttattgttgCAGCTCCGAGGAAAAATCTCCGCTGACACAACATGGCCCGACTAACAGTCTTGGCTGgACTGTCTCTTTTGATGTGTCTCCAGATGGTGTCTTCTACCAAACTGGTGTGCTACTTCACCAACTGGTCCCAGTATAGACAAGGTGCTGGCAAATATCTGCCTGCCAATGTAGATCCCAACCTCTGCACTCACCTGATCTACGCCTTTTCAATAATCAACCATTCTAACGAACTGGCTCCCTATGAGTGGAATGACGACGTTCTCTACAAATCCTTCAATGAGCTGAAGAATAGAAACGCCCAGCTGAAGACTCTGCTGGCTGTTGGTGGGTGGAACTTTGGAACTTCACAatttaccaTCATGGTTTCATCCGCTGCCAACCGCCAGAGATTCATCCAGTCTTCTATCAGTTTCTTGAGACTGCATGGCTTTGACGGGCTGGACCTGGACTGGGAATATCCTGGAGCACGAGGGAGCCCACCAGAGGACAAGAAGAGATTCACAGTGCTCTGCCAGGAATTACTCGCCGCCTTTGAAAAAGAAGCcgctgtgacaaaaaaaacacgatTGCTGCTCACAGCTGCAGTGGCTGCTGGGAAGGGAAACATCGACAATGGATATGAGATTGCTGACGTCTCAAAGTTCCTAGACTTCATAAATGTCATGACCTATGACTTCCACGGAGCATGGGACCCGTTCACTGGCCACAACAGCCCTCTGTACCGCAGCTCTCACGATCAGGGCGACAACATCTACAACAATGTGAACTTTGCTATAAAATACTGGAGAGACCAAGGAGCTCCTCTTGAAAAGCTCATAGTTGGTTTTTCTACATATGGACGCACATTTCAAACATCATCAGCAGTTAACGGTGTTGGAGCATCAACAAGCGGACCAGCCTCTGCTGGGCCCTACACCCGTGAAGCTGGGTTTTGGTCTTACTACGAGGTTTGCACTTTCCTCCAAGGAGGCAGTCTTCACTGGCTTGATGAGCAAATGGTGCCCTATGCTACTAAAGGAAATGAGTGGGTTGGGTTTGATAACAGGCAGAGCTTTGAAATCAAGGCACAGTATGTGAAAGATAACACATTTGGAGGAGCCTTTGTCTGGGCACTAGATCTGGATGATTTTACTGGACAGTTCTGTGGCCAGGGAAAATATCCCCTCATTAGTTTTCTGCGCTCTCTTCTGGATGCAGattttCCACTTCCACCTCCTGTAACCACACACTCACCAGTGAGCACCACAAAGCAGACTCCTGCTGCCACTTCTCCTACAACGACCCATGCAGAAACTACCACCACAGTTGTTGATTCTGGAAGTGGTTTCTGTGCTGGGAAGGCCGATGGCCTTTACATAAATGCCAAGAACCGCAACTCCTTTTATCAGTGTTCCCAAGGAAACACACACCTCCAGCGTTGTCCAGTTAATCTTGTTTTCAGTGTGAGATGCAACTGCTGCGACTGGCcttaaataaatgtttccttATTGAAACAAAgcactgtctctttt

Function

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639128.1 lncRNA downstream 27922 13376627 ~ 13378863 (-) True LOC120558464
XR_005639126.1 lncRNA downstream 38412 13366263 ~ 13368373 (-) True LOC120558462
XR_005639127.1 lncRNA downstream 48980 13355117 ~ 13357805 (-) True LOC120558463
TU66059 lncRNA downstream 94056 13308517 ~ 13312729 (-) False LOC120558437
TU66135 lncRNA upstream 19341 13432519 ~ 13433095 (-) True G49514
TU66283 lncRNA upstream 242353 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA upstream 242353 13655531 ~ 13657376 (-) True G49624
TU66299 lncRNA upstream 334241 13747419 ~ 13748459 (-) False zgc:66479
TU66319 lncRNA upstream 626557 14039735 ~ 14125759 (-) False smim29
XM_039799476.1 mRNA downstream 601 13396016 ~ 13406184 (-) False LOC120558460
XM_039799475.1 mRNA downstream 601 13396703 ~ 13406184 (-) True LOC120558460
XM_039799477.1 mRNA downstream 670 13396703 ~ 13406115 (-) False LOC120558460
XM_039801265.1 mRNA downstream 62832 13339493 ~ 13343953 (-) True LOC120559526
XM_039801957.1 mRNA downstream 78535 13307588 ~ 13328250 (-) False LOC120559881
XM_039799473.1 mRNA upstream 1763 13414941 ~ 13435506 (-) False nfascb
XM_039799470.1 mRNA upstream 1763 13414941 ~ 13435506 (-) False nfascb
XM_039799474.1 mRNA upstream 1763 13414941 ~ 13435505 (-) False nfascb
XM_039799471.1 mRNA upstream 1763 13414941 ~ 13435377 (-) False nfascb
XM_039799472.1 mRNA upstream 1763 13414941 ~ 13431723 (-) True nfascb
TU66001 other downstream 153313 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 968060 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1015114 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1183783 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1237576 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 727202 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1118946 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 1432160 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 1432160 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2867866 16281044 ~ 16283856 (-) True G50217

Expression Profile