RNA id: XM_039799862.1


Basic Information

Item Value
RNA id XM_039799862.1
length 2214
RNA type mRNA
GC content 0.40
exon number 6
gene id smim29
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14039735 ~ 14125823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTAATGCGAAGCTTTTAAAACAGGAAAGTAAATTGACAACAGTCGTTATATTTTAGTCTGCTTGCTGCTGTCACACGAGCATATGACCAAATACCAGGAAACCAACTAACCGCAGCAAGTAAAGTAGCTTTTACGATTTCCTCGCTGATTAGGAAGGGCACCATGTGGAAGTCACATGAACGACAAGGATGAGGCATAAACAAGGAGGCAGCCTGAGGAGAGAGCACACTGTCAGTCATAGGGAGGGGGTTTGCTGCTTGTAAAGGCCCTGCACGAGCAGCCCCCTGTGTCCCCCTCTCCTGAACATATGCAATGAACAGCACTACTGAGACCCCTGCCATCATAGATGGGGATGTGGCAGTCAGCTATGTGTTGGTGCCATTTTTCCTCATCACTATCATTGGAATAGCTGCAGCTGTGGTCATGTATATTCGGAAAAAAAGGAGAATTGACAGACTTCGTCATCAGCTGTTACCAGTTTACACATATGATCCATCAGAGGAACTTAATGAAGCTGAGCAAGAAATGTTGTGGAGAGAGGAGGACACAAGGCATACCAGTTCCTCAATTGATTGTACAAGGTTGGGCCAAAAGTTATCAACAGAGACGCCCTCTTCTGACCAAAGACGTCACTGCATGATGGTAGTAAACCATGGCAGTGTGGAGAAAACCTTCAGCCACAGAGATGAGTCATTCTTCAAGTCACGCACAAGATTGtctttgtttgatttttctttGCCGCCGTTTGCGATATCTTTCCAGTTTCATGTACAGACGGAGTGACTGTTCAATTTTGTGGGTCCGATGTGCCtaacatacatttatttatttgaaattatttattcaaacttttttttgttttttttttactgtggtaTTCAGCGACATGACTCAAAGTTTAGAAAGGTGGAATCCCTCTGAAGGTAAAGGTTCCTGTAGGTTTACTCTGTTTACATTCATCATGTTGTTGTGGGCGACATGCGGCGAGCGGTAATGTTCCTGTGGGTTACAGAAGGCATTTGTACGGACTCTGACAGGGTTTGTGATCGTAGGTTGCTGTGCAGCAGTTGTTTGCAGTGCATTAAAAACAATTATGGCTTCTTTAATGAAATGCTTTGAGTTTTCAACAGTCACACTTGTTGACATAAAACACTATAGCATGACTTAAAAAATCCAGTTTTAAACTCAGTTTCATATTGATAAAGATagatttaagatatttatgagATAGATTGGGTGTCAAAATGAGGTTGGAtgattttatttgtttcattttgagtCAAAAGGTTGAACGTGCACTTTTTGGTTTGAGTTTCCTCTCAGAATTTACCAAGCTGCCCCACGATCCGGATCTTTTAGCGGTTTAGCCAAATCCTATGACTCTTTTCAATGGCATGAAAAGCCCGATATGGAAGTAACACCGACCTCCTCTCATCTACAAAATGAGCTATGACTAGTGCCCTAAATATGTCCTGTCTACAAGGCATGGCACCAGCACAAATTTACCTCCAGCTGAAGATGAATGCCATAGGTATGACTGTCTCAAGCACTCAGGAAACTGTGCTCTTTTTCTTGATGAATTGTAACTTTTCCTGAATTTTATTCTGAATGTAAACTAAATGCAATAGCATTGTTTAAACTGTTCTTGAAGGGGAACCTGTATTGGTTGTGAATATAAAAAGGTCTTGTACAGATAATGCCTGGACTTGATGTCAGGTATGATATTTAGGTGTTTCAGAATGagaacaccttttttttttcccttttaagTTTCAACCTGAAAACTTCTTTACCCCAGAACATTTTCCTCTGTGCTCCCCAGTCATCTTTACATCTCACTGTTCATTGTATATGCATTATAAAGACTTTGTGACAAACCAATGAAATAGGATAGTCACAATTTAAAGTTGTACGAATATCCAATCAGGACATTGATTTGCACTGGTAACACTCATGGTAAGGTTCTCATGGAACGCTGTGATTTCCGGTTGCCCATGACAAAAGTGAAATAACTACTGATGTAAACGTGAACTTGGCAGCACTGTTATAAAGTTGAACCGTCAAACTGTTGTACCAGTTTGTTGCTTTAGGAGGGAATTTATCGAGGCTGTTGATTTAAAACATTGAACATAATAAAGTAATAACTTTGTCTTTGTGCCAACTGTCATATGCAGCTTAACTAGCCGAGAAGTGTAGAGGAAATTATACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66299 lncRNA downstream 372587 13747419 ~ 13748459 (-) False zgc:66479
TU66283 lncRNA downstream 463670 13655531 ~ 13657376 (-) False G49624
TU66284 lncRNA downstream 463670 13655531 ~ 13657376 (-) True G49624
TU66135 lncRNA downstream 687951 13432519 ~ 13433095 (-) True G49514
TU66102 lncRNA downstream 713603 13406851 ~ 13407443 (-) False LOC120558461
TU66368 lncRNA upstream 54866 14180340 ~ 14184391 (-) True G49673
TU66371 lncRNA upstream 80115 14205589 ~ 14205824 (-) True G49675
TU66372 lncRNA upstream 83098 14208572 ~ 14208852 (-) True G49676
TU66373 lncRNA upstream 86736 14212210 ~ 14212497 (-) True G49677
TU66374 lncRNA upstream 91546 14217020 ~ 14217510 (-) True G49678
XM_039799856.1 mRNA downstream 38241 13850446 ~ 14082805 (-) False LOC120558702
XM_039799857.1 mRNA downstream 38241 13850446 ~ 14082805 (-) True LOC120558702
XM_039799855.1 mRNA downstream 341955 13754929 ~ 13779091 (-) True LOC120558701
XM_039799852.1 mRNA downstream 367181 13747403 ~ 13753865 (-) True zgc:66479
XM_039799871.1 mRNA upstream 14906 14140380 ~ 14142494 (-) True LOC120558710
XM_039799869.1 mRNA upstream 59835 14185309 ~ 14193336 (-) True LOC120558709
XM_039801596.1 mRNA upstream 70008 14195482 ~ 14203960 (-) True LOC120559681
XM_039801595.1 mRNA upstream 73985 14199459 ~ 14203960 (-) False LOC120559681
XM_039800933.1 mRNA upstream 102896 14228370 ~ 14230406 (-) True taf11
TU66001 other downstream 867574 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1682321 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1729375 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1898044 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 1951837 12149794 ~ 12169209 (-) False dnmt3ba
XR_005639168.1 other upstream 14906 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 406650 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 719864 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 719864 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2155570 16281044 ~ 16283856 (-) True G50217

Expression Profile