RNA id: TU66375


Basic Information

Item Value
RNA id TU66375
length 1161
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G49679
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14217647 ~ 14218807 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTTGCTCATCCCTGAGCCACGACTCAGCATGCTAAAGGCATCCTTTGTTATTGAAAACGCCCCTTTGGTCAGGTCCAGCGAGGCACTAATGGCATCTTTGGTCACATCCTTGGTGACAGTGATGGCGCTTGACAGCTCTCCCTCCAGGCTAAAGTTGGAGGGTTCGCGGGAGAGGGCAGGGGAGTGTCCAGGTGAGAGTGGAGGGGAGAGGACAGATGTGTCCTCCTGTGTTGTCAAACCATCCCCCTCcaacccctcctccacagcctcaCATGCCTCCTCCACCACCCCATCTTGTTCATCCTGACCAAACACATTGACAGTATTGGTGGAGGAGATGCCATTTTCTAACTCACTGTTCTCCAGGACTGCCGAGTGATGAGTCGGGGAGATGTCAGAGTCTGTTATGCTGGggctgtctgtctctggggTGTGGGGAATTTCTTCCTCTGGATCTGTGCACACTGGTGGCAACAGGAGACCCAATTCTGCAGAGTCCACCAGAAGGGCAAGGCTAACTGTAGCAGGTCTTGTCTTCTGGCCGTGAGCCTGCTTAACATCTCGTAGATCCCTGCCCAACTCTGCCCCCAACCGAGCCATGGCATCCTTCATCCTCAGCAGGGCAACATACTGGTAGTGGTTGAGCCACAGCTTCACTGGAGTGATGGTGTGAGCCAAGAAGTGGATAGAAGCGAGCGAAGCCTCTTCCTGCTCTGAAGATGGCTGGCGGGCTCTGCTGGGACTAGAGGAGGAAGACAATGATCCATTTTTAAAGGCAGAGGGCTGACACATCCACACAGACATCGCAAAGGGCTCAACAAAAGGTTGGGTTCTGCCTTTGGGGAATCGCCGAGCTCCGTCAAAACCTAGGGTCGCACGGGACAGACTGAGAGACCAGACATCCTGTGATCGTAGCTGCTTTCTGTCCAGAGGTTGGGGCGCTGTCTCTTGAGAGTGCTGGAGGAAGGTGGAGGGGATGGGGTGGAAGGCACTCTGGTCTCTGGGGTAGGGGCATGGAGGTGTGTGCTGGAAGAAAGGGCAGCTGGCGAACTTGTCAATGGTGCTACTGAGGTCAGCTCTGGAGCCATGAGGGCAGAGGCGGGTGTTGCTGAGAACCATCTGGGGTACAGTAACAGAGAGTGACTGTGGACGTTCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66374 lncRNA downstream 137 14217020 ~ 14217510 (-) True G49678
TU66373 lncRNA downstream 5150 14212210 ~ 14212497 (-) True G49677
TU66372 lncRNA downstream 8795 14208572 ~ 14208852 (-) True G49676
TU66371 lncRNA downstream 11823 14205589 ~ 14205824 (-) True G49675
TU66368 lncRNA downstream 33256 14180340 ~ 14184391 (-) True G49673
TU66376 lncRNA upstream 165 14218972 ~ 14219179 (-) True G49680
TU66377 lncRNA upstream 703 14219510 ~ 14219780 (-) True G49681
TU66378 lncRNA upstream 1410 14220217 ~ 14220618 (-) True G49682
TU66415 lncRNA upstream 181208 14400015 ~ 14402630 (-) True G49716
TU66442 lncRNA upstream 183903 14402710 ~ 14403787 (-) True G49739
XM_039801596.1 mRNA downstream 13687 14195482 ~ 14203960 (-) True LOC120559681
XM_039801595.1 mRNA downstream 13687 14199459 ~ 14203960 (-) False LOC120559681
XM_039799869.1 mRNA downstream 24311 14185309 ~ 14193336 (-) True LOC120558709
XM_039799871.1 mRNA downstream 75153 14140380 ~ 14142494 (-) True LOC120558710
XM_039799863.1 mRNA downstream 91824 14122480 ~ 14125823 (-) False smim29
XM_039800933.1 mRNA upstream 9563 14228370 ~ 14230406 (-) True taf11
XM_039801022.1 mRNA upstream 185211 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039799588.1 mRNA upstream 197529 14416336 ~ 14432994 (-) False LOC120558545
XM_039799587.1 mRNA upstream 197529 14416336 ~ 14432994 (-) False LOC120558545
XM_039799586.1 mRNA upstream 197529 14416336 ~ 14432994 (-) False LOC120558545
XR_005639168.1 other downstream 72425 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 964175 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1778922 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1825976 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1994645 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 313317 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 626531 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 626531 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2062237 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3469308 17688115 ~ 17689760 (-) True G50712

Expression Profile