RNA id: TU66378



Basic Information


Item Value
RNA id TU66378
length 402
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G49682
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14220217 ~ 14220618 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAAACCCACCTTCATAATGATGCTGATGTTGCTCATGTGTAACTTCATTGGCTGACCGTCAGCACTGAACTCGTCTTCCAGAAAAGGACCAATGTTAGCCACTGTGGAGGCTAACAACTCTGCCTTGCAGTCTTGCACTCTCATATCCAGGAAGCCCAAAGACTCGGCTAGAGCAGAGTGTCGGATCGCAGAGGGACCCGTTTCTGCTCGCATGCACACTACTGGAGAGCCCCTGGTACCTTGCTTCTGGACTGGTCCGACTGGGGCTGCAGAAATAAAGAAGATGGTACATTTGTAAGCCACGTGGGCCCTTTATGCTGCAACGAGTTCAAGCATGCTTTCCATACTGTAACTTGATCATGTTCCTTTTTTAAGCTGAGACATGTGCCGATATTAAGTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66377 lncRNA downstream 437 14219510 ~ 14219780 (-) True G49681
TU66376 lncRNA downstream 1038 14218972 ~ 14219179 (-) True G49680
TU66375 lncRNA downstream 1410 14217647 ~ 14218807 (-) True G49679
TU66374 lncRNA downstream 2707 14217020 ~ 14217510 (-) True G49678
TU66373 lncRNA downstream 7720 14212210 ~ 14212497 (-) True G49677
TU66415 lncRNA upstream 179397 14400015 ~ 14402630 (-) True G49716
TU66442 lncRNA upstream 182092 14402710 ~ 14403787 (-) True G49739
TU66447 lncRNA upstream 195773 14416391 ~ 14425615 (-) True LOC120558545
TU66514 lncRNA upstream 319212 14539830 ~ 14544632 (-) False map3k12
TU66554 lncRNA upstream 448835 14669453 ~ 14672001 (-) True G49801
XM_039801596.1 mRNA downstream 16257 14195482 ~ 14203960 (-) True LOC120559681
XM_039801595.1 mRNA downstream 16257 14199459 ~ 14203960 (-) False LOC120559681
XM_039799869.1 mRNA downstream 26881 14185309 ~ 14193336 (-) True LOC120558709
XM_039799871.1 mRNA downstream 77723 14140380 ~ 14142494 (-) True LOC120558710
XM_039799863.1 mRNA downstream 94394 14122480 ~ 14125823 (-) False smim29
XM_039800933.1 mRNA upstream 7752 14228370 ~ 14230406 (-) True taf11
XM_039801022.1 mRNA upstream 183400 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039799588.1 mRNA upstream 195718 14416336 ~ 14432994 (-) False LOC120558545
XM_039799587.1 mRNA upstream 195718 14416336 ~ 14432994 (-) False LOC120558545
XM_039799586.1 mRNA upstream 195718 14416336 ~ 14432994 (-) False LOC120558545
XR_005639168.1 other downstream 74995 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 966745 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1781492 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 1828546 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 1997215 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 311506 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 624720 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 624720 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 2060426 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3467497 17688115 ~ 17689760 (-) True G50712

Expression Profile