RNA id: TU66447


Basic Information

Item Value
RNA id TU66447
length 5453
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC120558545
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14416336 ~ 14432994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatatacatccaATGTGGAAATCCTAAAGTGCTTATATTATGGTCATTTTCAgctttttaattgtatttagaggatGTACCTGAATTATAACGAGCATTATAACgtatgttacaaagtgacgcacgttcgtcacggaagtaaaggctggactacaatagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaagtccctttggggtggactttgggctttttcactttgtaaacctataacgtgcacaaaaaagatctATAACAcagtaaaggaaaggggaaaagccaaaaaccataatatgagcactttaactaaCGTACTAAGTACAGTATCTATCAGTAGCACCCGGCTGTTGCAAAATAGTCACACAAACGTTGGTGCTTTTTATGCTAATCACACTGGTTGGTTGTAATTTGGTAGGCTTCATCTGACGTTAGTGGGTGTTGGATCACCCACCGGGTGGTGCCCTAAGCTCCAGGCCAAAGCAGACCCTCTCAGCGATTAGATCTCTAACTGCAGTAGCGATTTACCAGTGGTTAGTTACAATGAATAGGATGAACATTATGTGACAGAGCAGACTCACGGCTGTAAATAATTTGGCCAAGTTGGACAGAGGatagaaaagaaaacaattatttattttagaaaCAATGAATTGTAGTCTGACACAGTGTCTTTTTCGATGCCACCACAAGAGGGTGCCAAAGTTTGGAATTTTCAAATGCAATATATGCAAATGTCACCCAGAGCATTTGGCTCGACCCAAACAAAGAATTATTGCAGACTACAAAGACTCTTATTTGCAGATTAATCAAACTTTGAACTTCACAGTTGTGACTTGAGCGACATGAGCTACACATGACCAGATGAGGGGAAGAAGCAATGCAAACAGATAGACTATTGCAGACTCCCCATGTTGAGAGTAAACCagattttgttctgttttttatgTGATCCACTTAAAGGCAagttcatctacagtatatagcaCATtccagcaacaaggcaattcaaggTGAATCTCAGTTTCTCAATTTGAAGACCCATCACAATCTCCTTGATCCATTGTATTAAAGAGATAGGGCAGGTAGCCTAATGAAGAATACTCATCCAGCTAACAATGAAGCAAATGCTATTGCATTCAATGACAGAAATTCCGGGTGGATTGTAAATACTAACATATCTTCTTTGCCTTTTGGAGAACTGTGTAATGTCTAGTTAAGTTATAGGGTTGATAATTCAGGGTTGATATTTCAGTCTATGAAAAATGATGGTATGATGGATTAAATAAAGCATATGTATAAATGTGTGGAAATAGgaacaaagtgaaaaataacAAACCTGACCAATAACTGGGTGGTTAGAGTGGAAAATACTGCTCAAATTCATCATTAGGTCTGGGCAGATGGAGGGTTTCGTCAGTCAGCAGAGAAAGTGGTCACGTCTGCGGCATTAAAGTCTCAACAACAGTTTGATGACTGCAGAAACCAAACAGTGTTGGTGCAGTAGTGGTGGTCCCAAACATttgagaaaaacacaaatgactGGATATAAAAATAGCACAGAAAGtcttaagtttgtttttttgtttgcacAGATGATCTACCCTACTTGAAGTGTCCCCTGCACACTGTCCTAAAACTCACTCCTGTGGCTTATGGTTGTAAAGTGGACATGTTTGATCTGAAGGTGGAGGCTGTCAACACTCACAGGGACAGACCATTGGTAAGCTTGTgacctttttattattttctgtcacAAACATGCTGTGACTTTTCCTGAAGTTGTCACTGTCAACCAAGAGTTTAGTGTAGGGCATGGGCCCAGTGCATGCAGCCTGTAGGATCAGTCACCCCTCCTACGCGGATGACTGGAAAAACAGCTGTAAACCACAGCTATATTTAAGAATTCAAACTCAAATTACACACTTCTGTTTCTTATTCTGCTTTCAGGAGCTAGATATACAGTCTTCTCTCCAAAGTCCAGACAGAGCCAGGTTAGctgtttccctgtttccagtctttatgctctAAGCTTAGCTAACAGGCTGCCGGCTCTAGTTTTGTATTTAACAGACAGATATGAGATTAATCGATCCTCTCCAAGAtttggcaagaaagtgaataagagtattttccaaaaaaaaataaaactacaactAGATTGAATTACTTACTCGCATATCAATACCCCTTTCCTCTCCATCGGTCCATAGTGCTCATATACAAAGAGACTTGTGCCTCACAATGAACGATgattattttgaaagtgtttttggctatttttatgcattttgtTATAGACAGGGAGAGATGCAACGAAGGTCTCCACCGGATTCGAACCAGGGACGTTGAGGTTCATGGTCAGTGTCTCAACCCCAAAGCTACGGGAGCACTGCCCCCACAGTTGcagaataaaatgaaaaaaaccccataaaaacaaggaaattaaataatggctacaatgtaaataaagataATTATAAAATGAACATTGCTTTATTattaggccggctacacactggctgcgggGTGTGAGCGTGGGGTGAGAGGTTGACGttagcgtggcgtttctgttgcgtctagccttgtctgtacacatgtatgtttcccattgatttactgcactcaagcagtagtatacttcagttaaacataaatatctactgatttgattacagcaaaaacaacgtcggcagtattgacggcaaaataggctacagaatattacGTTCTGTATTGataggtgcaatatttgaaaatggataattattataatttttttgtgtttttatgtcaaaacctagagactttcaaacatcaacatgtcatttattaatatgtatttgtgtcaaaatgacatataaacatcttttctttttctattttgcctggaaacgcttccgaCACGTTTGCGtgttgcgtgaaaaataggTGTCGTACCTATTtttagcatgcacgcgttttcggcgcggctcgagccgcaCCTGAGACGTGCGCGTCACGCAGGcggtgtgcaagctctaacctgttaacatgggaaccaaaataaaaatggacacgctcacgccatgcagccagtgtgcaggccTTAGAATCCATATTCACCTCATCATATCCCCCTTGGCTCTCTCTAGGAACCATTAGTTAGCATTGACTGAAGGATGTGTGAGgtacgcacattttcaacaCAAGATCTGTTTTTACAAATGCCAGTGTATGTGTGGAAAGtggcatactgtactgtatgcatggTTTGTGTGCATATGCATAATTTTTACATCTGGCCTCTGGACTTTTCAAactcaaaaagaagaagaagacatactttattgatcccccaaggggaaataatttttttgtactCTGTTGTTACAGTTAGTAAGCCGACTTGAAATGCCGTACAGAAAGTCTGTGTTTAGTCAGGGAATCCAAATGACACATTCAGTGCCTTTTGTCTTCATTTCCTAATGAGCCAGCTTCATATCTGTTTCCAGGTTGTGGAGTTTGTGCTTAAGCCTGCCCAGTGTTTAAACCAAAAGTCCTAGACAGAGTGGGTGtcaacacatacaaacatttaTGGAGAAACCATAAAATGGGGTGAGATATATCCTGTCTGCTGAGACCAACATGACAATGGCTTTTATATGTATGACTGTTTGTCTCAGcggttgtttttctttctgtgccCTCTCACAGTCCCTTACACAGGACACAGTGATTTCAGACCTTCAGTAGGAGAGGTTTGATTAGTCAAACATAATAAAAAGcatgggcgcccagatagctcagttggtagagcgggtgcccctatatagaggtttactcctctgCGCAGcagtttgactccgacctgcggccctttgctgcaggtcattccccctctctctcccatttaatgtcttcatctgtcctcagataaaggccgaaaatgcccaaaaaaaataatcttaaaaaaagcacATAATAAAAAGCATGTGTTAATCATCCCACCTTGTCTGTCTGTTCTTCACTGACCAGAATAAAGTCAGCACAGATGCTGTGCCGCCAGCTTTCCTCCGACGGAACAGCTTCACTCCGTTGTCCAGCCAAGACCAGATTAAACGACCTCGTCTTTACAGCATGGGCAACCCTCCACAGGCACGCATGTCCCAGGCCCCCGCTTTACCCAGCATGCAGTTCTCGGAGGTGTCTGAGGGTGCAGAGCTGCTACAAAGCAAGGTCAATGTAGACTCTGTAAACTGTTTCAGTGCAGCAGACACAGACGAATGTGTTCGGAGTTAAAGAAGCACAGAAAGAGGCTTTTCTCCACATGGATGTATCACCAGTTCTGAGGACCAGCAGTATAATCCCCAGCTTCTTCAGCCATTACATTCTTAACCAATGTATTACACACCTTATCTGTGTAAGCCTATATGtgtttattctgtttttttgttgaatAGGTAATGTGTGTTATTGAGTGtgtgcacatacatacatacatacatacatacatacatgaacTCAAAAGCCTTGCATAAAAGCCTTCATATCTAGATTTATAGTAATGTGGGTTTTTTTAGTAAGTAGAGACTCTTAAAACCCGTCCATTAGTCCCTAGCACACTCCACATACTGTAGTCTACAGTCATATTATGCTGCATTAGATATAGAACATGTTGATTGTGAATTGTATATCTCAATGCAAGTTACTACCTTTAGTTTAAGTGTAAGAGAGTGCCTCTCTTAAAGGAAGCCATTTACAGCTTCGTTTCTTCTCTCCGATTTTTTCTTTAAGTTACCTATTTAAACATTCCCAGGTAATGTGCATCCTTCCATGGGTGGTTTTGACAAGATGTAGTAATaatttgattttgaaatgtaatttaaagcatgtaaaccttgCAGTGGGCAGACACACGCTGTGAAaagtaatgaaatgttttgtctagCCCTACAAAAAGGACATCAGCTACTGTGCTATTTTTTACTCTGTGACAATGATTCTGTTCTTCTCTTAAATGATGCCTACAGTACCTGTATGTTTTGCCTTCTACTGAAATAATGGCGCTGTCTACTGTGATAATGTAAAGCTGATCACATTTGAACTCTAAAGAATTGATGCAAATATTTCAAAATGCTCGTGACTTTTAATGCATTTTAGTTTCTTCATAAGGAAAAGCAAATTGTGTACTCCTAAAACGACAAAGATACTGTTTGTTAAGTACCAGCTTCATAGCAACCAAATGTTTAGTATTCACATGATTTTGATATCCgcaataaatcaatatttgtgaaaaGTGCCTTTATTTAAAGGACTACAAGGGACTATAAGGTGGTGGCAATAGTAGTCAAcagtattattatataatataatctgCAAAAGTATGTTTCACCTTAATTGAATGATTGGCAATATATTTGGATGTCTTAAAAAtagctttaatgttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66442 lncRNA downstream 12604 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 13761 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 195773 14220217 ~ 14220618 (-) True G49682
TU66377 lncRNA downstream 196611 14219510 ~ 14219780 (-) True G49681
TU66376 lncRNA downstream 197212 14218972 ~ 14219179 (-) True G49680
TU66514 lncRNA upstream 114215 14539830 ~ 14544632 (-) False map3k12
TU66554 lncRNA upstream 243838 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 248013 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 257095 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 419723 14845338 ~ 14853817 (-) True G49845
XM_039801022.1 mRNA downstream 6986 14404018 ~ 14409405 (-) True si:ch73-217n20.1
XM_039800933.1 mRNA downstream 185985 14228370 ~ 14230406 (-) True taf11
XM_039801596.1 mRNA downstream 212431 14195482 ~ 14203960 (-) True LOC120559681
XM_039801595.1 mRNA downstream 212431 14199459 ~ 14203960 (-) False LOC120559681
XM_039799869.1 mRNA downstream 223055 14185309 ~ 14193336 (-) True LOC120558709
XM_039799581.1 mRNA upstream 9630 14435245 ~ 14517114 (-) False dlgap4a
XM_039799578.1 mRNA upstream 9630 14435245 ~ 14517114 (-) False dlgap4a
XM_039799584.1 mRNA upstream 9630 14435245 ~ 14517114 (-) False dlgap4a
XM_039799579.1 mRNA upstream 9630 14435245 ~ 14517114 (-) True dlgap4a
XM_039799582.1 mRNA upstream 9630 14435245 ~ 14517113 (-) False dlgap4a
XR_005639168.1 other downstream 271169 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1162919 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 1977666 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2024720 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 2193389 12220737 ~ 12223002 (-) False ppdpfa
TU66513 other upstream 106509 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 419723 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 419723 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1855429 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3262500 17688115 ~ 17689760 (-) True G50712

Expression Profile