RNA id: TU66513



Basic Information


Item Value
RNA id TU66513
length 979
RNA type TUCP
GC content 0.51
exon number 10
gene id G49766
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14532124 ~ 14534605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgacttaCATCGTTTGGAATGGTCAGCTCATGAGAGCCAGTTTGTGCAGAGGCGTCCATCCCCTGGAAGCCCTGGTTGCTATGTGCAATGGGGAAGGGGCTCTGCTGCATGGCCAGCTGGTGAAGTTTGGTGAGATCAGGCTGTGGAATGGCGTGCTGCCCTTGGACAGCGTAGGCCTGACCACCTGCAAAAATGACAGGAGAGCCTGAGGGTTTGGGTCTGTATGGGATGGTCACTCCCTTTGGTGGAGACTCAAGCATGACCACGCAGATTTGCTTGACACACTCGATAATGGACTGTGGGGTCCCTGCAACGGTGATGGCACGCTCTGTTGAGTTGGGCAACATGTCCCCTGCTACTTGTACCTGAGCTCCTGCTGACTCTCTGATTTCCTTGATCTTGCATCCACCCTTACCAATGAGTGAGCCACACTGGCTGGCAGGCACAACGAGACGCATGGTGACTGGTGGTTTGCTGGTGGCTGTACTGTTAGTCATTGAGGTGCTAATGTCCTCCTCCAGTTTCTCAATGATCATTGAGAAGGCTTTAAAAATGGAGGTTGTGGGTCCCGCGAGGGTTATGATCCTCTCCGGACAGTTCCCCTCTGAGATGTTGATGCGAGCCCCACTCTCCTCTCTCATCTTCTTAACTGATTCTCCTTTCTTGCCAATGATGCTTCCAACCTCCTTGCCATGCATGAGTAGTCTGATGGTTAAGGTGACATTAAGTCCTCCTTCAACCAGACTTGAGTCCATTTCTGCAGGTGAATCCACAGTTAAACTGGCCAACAAAGTGGGTCTTTGGTCACTGGTTGAACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66447 lncRNA downstream 106509 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 128337 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 129494 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 311506 14220217 ~ 14220618 (-) True G49682
TU66377 lncRNA downstream 312344 14219510 ~ 14219780 (-) True G49681
TU66514 lncRNA upstream 5225 14539830 ~ 14544632 (-) False map3k12
TU66554 lncRNA upstream 134848 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 139023 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 148105 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 310733 14845338 ~ 14853817 (-) True G49845
XM_039799581.1 mRNA downstream 15010 14435245 ~ 14517114 (-) False dlgap4a
XM_039799578.1 mRNA downstream 15010 14435245 ~ 14517114 (-) False dlgap4a
XM_039799584.1 mRNA downstream 15010 14435245 ~ 14517114 (-) False dlgap4a
XM_039799579.1 mRNA downstream 15010 14435245 ~ 14517114 (-) True dlgap4a
XM_039799582.1 mRNA downstream 15011 14435245 ~ 14517113 (-) False dlgap4a
XM_039800136.1 mRNA upstream 5183 14539788 ~ 14551558 (-) False map3k12
XM_039800135.1 mRNA upstream 5183 14539788 ~ 14551558 (-) True map3k12
XM_039801487.1 mRNA upstream 31212 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA upstream 31212 14565817 ~ 14590837 (-) False col2a1a
XM_039800751.1 mRNA upstream 82006 14616611 ~ 14620139 (-) True spryd4
XR_005639168.1 other downstream 386902 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1278652 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2093399 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2140453 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 2309122 12220737 ~ 12223002 (-) False ppdpfa
TU66613 other upstream 310733 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 310733 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1746439 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3153510 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3304939 17839544 ~ 17886333 (-) False zbtb46

Expression Profile