RNA id: XM_039800136.1


Basic Information

Item Value
RNA id XM_039800136.1
length 5052
RNA type mRNA
GC content 0.49
exon number 14
gene id map3k12
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14539788 ~ 14551558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAATTCAGCACTGGGAAGGAGACAGCtccctccccccaaaaaaccaGCGCGCCTCACGTTGCACAGGTCCCCGGTTATTGATAACACAATTTGCCCGATGGGATTCATCCCGGTAACGTGTAACTCGTGGATATAGGGACTGGAGAACAGACAGCCGGGACCGAAAAAAAACAACGATTTGCTCATCATCAACGACAAACAGAAATCCGAGCCCACCCCTTCACTTGACAACGCGACATCATCCAGGCAGAAAGGCTTACATCTCATCTTTCCATACTCCATCCACCCTAACCTGCTGTGTTGGGGAAACCCCTAATGAGTGGGACCTGTATCCATGAGCCCCGTGCCCCTTCCCCCTCCCTGTCAGGCTTCAGCACCCCCATCTCAGAACCCCCCTATCGAAGACTCGATGGAGACACCCCTGCCTGCACCCCAGAAACGGACCTGACCCCCACACAGTGTGTCCTCCGTAACGTGCTGTCCATCGACACTGGTGGACCGGGGGCGCCAGGCGGCAGCAGCCCCACTCCCAGTGATGGAACCTCAACCCACTTTGACAACAGCGTGCTAAAACTACATGAACATGAGGCCTGCCAGTGTTGCGGCGGGGCCGAAGCGGGGCACAGTCCAGAGGCTGGTGCTGTTCGGAGCCAGTCGGAGAACATTCGGCTACAATCAGGAAGTGGAGGTTTTTTGGAGGGACTGTTTGGCTGCCTAAAACCAGTCTGGACCATGATTGGAAAGGCCTACTCCACTGAACACAAACATAGCCATGAAGAGTCCTGGGAGGTTCCTTTTGAGGAAATCTCCGACCTGCAGTGGGTGGGCAGCGGGGCACAGGGGGCCGTCTTCCTCGGCAAGTTCCACGGAGACGACGTGGCTGTAAAGAAAGTGCGGGATATCAAAGAGACCGAGATCAAACACCTCCGCAAACTCAAGCACCCCAACATCATCACTTTCAAGGGCGTGTGCACCCAGGCTCCTTGTTACTGTATCTTGATGGAATACTGTGCCCAAGGCCAACTGTATGAGGTGCTGAGGGCCGGTCGTAAAatcactccctccctcctggTTGACTGGTCCATGGGCATTGCAGGTGGCATGAACTACCTACACCTCCACAAAATCATCCATCGAGACCTCAAGTCCCCCAACATGCTGATTACACATGATGACCTAGTAAAGATCTCAGACTTTGGCACCTCAAAGGAGCTTAGTGACAAGAGCACCAAGATGTCATTCGCCGGCACCGTAGCTTGGATGGCTCCTGAAGTAATTCGGAATGAGCCAGTGTCGGAAAAGGTGGACATCTGGTCCTTTGGAGTGGTGCTGTGGGAGATGCTAACTGGAGAGATCCCTTACAAAGATGTGGACTCATCTGCCATCATCTGGGGTGTGGGAAACAACAGCCTTCAGCTGCCCGTTCCTGAGAGCTGCCCCGACGGCTTCAAGATCCTCCTCAGACAGTGCTGGAACTGTAAGCCCAGGAATAGGCCCTCTTTCCGTCAGATCCTTCTTCATCTGGATATAGCATCAGCTGATGTGCTGTCCACTCCACAAGAGACATACTTCAAGTCTCAGGCTGAATGGCGAGAAGAGGTGAAACAGCACTTTGAGAAGATTAAATCTGAGGGTACTTGTATCCACCGACTCGATGAGGAACTGATCAATCGACGCAGAGAGGAGCTCAGGCATGCTTTGGACATTCGCGAGCACTATGAGCGGAAACTGGAGAGGGCTAACAACCTTTACATGGAGCTCAGCGCTGTCATGCTGCAGCTGGAGCTCAAAGAGAAAGAGCTGCAGAGGAGAGAGCAGTCTTTGGATAAAAAGTATCCAGGCTTGTTTAAGCATCACAGCTCCAGGCAGAGCAGCTCCTCCAACTCCATGGACAAACTCATCAAGAAGAGAAATGTCCCACAGAAACTGCCCTCGGGAAAGAGGCCAGACATCCTCAAGTCTGAGGTAATCATTCCCAAAATGGACTCCTCTGTGATGCAAGTCACTATCCCAGCCTGCCCCAACAGAAGCTCCACTTCTCCCAGCCGGTCTCGGAGGGTAAAGACCCGACATCGCAAGCCCGGGAAGGGCAGCAGTGGGGATCTGGCTGGACTTAAGGCAAATCAGTCCTCCCCTAATAGGGACACGACTGCCCAGGCTAACAGTTCTACCACTAATACCTCTAAGCAGCTCCTGGAGCCCTCTGCAGCCCTGCTGGGCCTCAGCcatgagcagcagcagaggcagcTATCCTCCTCCAGCCCTGACCTCATCTGCACCACGCTAGAGGCAGAGGGGCAGGGGAAAGGGGAGTCCTCTGTGGGCGGGctggagagaggggggagcCTCAGTGCCTCCGCAGGGTTAGGGGGATCAGAGGCGGGGGCAGCTGGTCTAGATGATCTCACAGAAACCCCTCCACGCAGTGACACGCCGAGCGAGGATGCTGCGTCGTTCCCGTTCTCCAGCAGCCCAGACTCACCATGTGGGAGGGGCGCGGCAGCAGGGCGGGGGTCCCTGGGATCTCCACGTCTGCCTCACGATGGGGAGGATAAAGAGGAGGGAGCCGGTGCTGTGAGGTTGCCCCGTGGGGCATCAGGGGGAATTGGGAGTCAGCACCTCACTCCTTCAGCCATTCTGTACAGGGCAGCTATCACACGCAAACAGAGGCGTGGAGTGTCatcagaagaggaggagggtgaAGTTGACAGTGAGGTTGAGTTACCAAGGAGACGACGTCCGACCAGCATCACCAAGTGCCAGTCGGTGTCTACCTTCAGCTCAGAGAACCTGTCGGTGTCGGACGGCGAAGAGGGCCACACTACTGACCACTCTCACAGCGGCACCCCCGACGTGGTCAGCACCAACACAGACGACAGGCTGGACGACCGCAGCGACGACCTCCTCTCTCAGGGGTCCGAGATCCCGGCGGACAACACTGATCCTGCGCAGATTTCCGATGGCCTGTCGGAGAGAGACGGAGCGCTAGGACAGGCCAAACCTCAGCTGGACGTCGAGCAGAATCCTAATGAGaGTCGGGCCATGTGTGATGACTCTGACTGCGACAGTGCTGAGCTGGATCAGTCAGGTAGCGGAGAGCCCAGTCGTCCTCCCAGTGCTGGAGCATGGGTGTCGCCGTCTCAACCCTATCAGGGGTCGCCAAAGGTGCCCCATACAGGACCTCCATAGATCACTGGACACTAGCAAATACCTCCAGCTACCATCACAGGCGTACACCAATCTGTCAGTGCAGTACATTACTGTTGTCATGAGGGATCACACCTACTACACCACTCAGACTATGACAAGTTGACTTATGGTGTCTCATAAGTTTGTTGGCTGGCAAACCTACATCAGATGACATAGGACATTTGTCATAACCTGACATCAGATATCCTGGCAGCTTGTGACATCAGATTAATGTCATTTAATTTCAGAAGGGTTTTTGTTTTAGGCAAAATAGTTACCAAGGTAACCTTAGCCACTGCTTCGGTTCAGCAAAAACCCTTCCAcagacgcacacgcacgcacaagaTACCACACTCGTCCTTTAAACACTCTAATCCTCACTCTGGGAGCATCTTCCATGATACTCCACACACTAATGCATTAAATACTAATgaataataatgtaaatatcCATTACATACCACATGAGAAATAtctaactttattttatttgtaagaTAACAATGTAAGACTAAACTGTATGCAGCCCTGTGAACAAATGCATGACTACATGTTTATAATTTATGGTTCGAATGTGTCAGTTTTATACTTTGTGAAAGTTTACACTTTTTTAATCCTGAAAGTATTACTTcagttattttgttttggtttttgttaataaatgtcagcacttaagaaaaaaaaaatggaatgaaAATCTCACCAAGACGTCGATCATGATGCATAGTTAGGATTCTCAGTAggtaatatattattttttttaaccctcctACTACTGAGTTTCAAATACACATAAGACATGAGTGAGGTTTTTTATTAAGCTTATCAAATTTGTGATAGGATGGGAGACCTTTGGGTTCACTCAAAATGCACTTTTGCCATTGTATGTATGCCGGTGTTTCTCCACCGGTTTCTGAAATGGTTAGctttttgattgttttattaGTATGATGTGCGTGTGTTCATAGAATACACTAGCATTGGTAACCAAGGTACTATCTAAGCAACAAACACTGGTGCTTTAGTAAAGGAGTCCTCCTCCGATACAGCATTGCACTCCTATAACATTGTCAGACTCAGCAGAAGCAGAGATACTGTCTGCTTTATTCCACACCCTTTTCTTTcttgtcaaaacctggtgcctacattacccacagcGCAACTTGACAGACAACAGTTTTGTCCGAGATTCCGAGGTTTGTGGATAATGTAGCCTCGAGCCgctagcctcaagcagagatgagtGGCGTGCTACAGAGGCCTGGTGAGCTCACTTCTTTTTAACTCCACACCTCCagattatgttttattttcaaaattgtaGTCTTCAGACCCAACTGATGCTGCCACAAATGACATCACAAGGCAGTTTAGTTGTATGAAACCACAAAAGGCTTCATAAAACTTTTAAAATCTTGATGTGTAAAATTAGcggagttcccctttaagtaaAGAACCAAAAGGACTCCTTTAGTTCATGATGTTCATAAGCTTCATAAGAACCTCAACTGTCCCTTTTACCCTTTAAGATAACTGCGGAGGTAGCCAGATAAGGAATAGAGCACTTTTCTGTGGTGTTTGCTAGTAGAACAGCAAGTATCCTTTGGGTTTAAatagaaatgttttgtttttatacagCATTGCACATTGTACCTGTAACATAGGAATTATATCGAAAGCGAAATATTATGAGCaacaataaataatgtattggttaaaaaaagaaaaaaaaagtgaaaagtgtgatgtttgtttaaaaagatgGGTTGGTCATTGGCTACAGTGTGTGCTGTTGCTGCATTAAATAAGACAGCTGAACGAGAAATAAATTACTATTTTCAATGACTTTAAGCATGTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66447 lncRNA downstream 114173 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 136001 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 137158 14400015 ~ 14402630 (-) True G49716
TU66378 lncRNA downstream 319170 14220217 ~ 14220618 (-) True G49682
TU66377 lncRNA downstream 320008 14219510 ~ 14219780 (-) True G49681
TU66554 lncRNA upstream 117895 14669453 ~ 14672001 (-) True G49801
TU66555 lncRNA upstream 122070 14673628 ~ 14673848 (-) True G49802
TU66562 lncRNA upstream 131152 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 293780 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 311237 14862795 ~ 14865747 (-) True G49862
XM_039799581.1 mRNA downstream 22674 14435245 ~ 14517114 (-) False dlgap4a
XM_039799578.1 mRNA downstream 22674 14435245 ~ 14517114 (-) False dlgap4a
XM_039799584.1 mRNA downstream 22674 14435245 ~ 14517114 (-) False dlgap4a
XM_039799579.1 mRNA downstream 22674 14435245 ~ 14517114 (-) True dlgap4a
XM_039799582.1 mRNA downstream 22675 14435245 ~ 14517113 (-) False dlgap4a
XM_039801487.1 mRNA upstream 14259 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA upstream 14259 14565817 ~ 14590837 (-) False col2a1a
XM_039800751.1 mRNA upstream 65053 14616611 ~ 14620139 (-) True spryd4
XM_039800783.1 mRNA upstream 133487 14685045 ~ 14698017 (-) False LOC120559225
XM_039800785.1 mRNA upstream 133487 14685045 ~ 14697898 (-) False LOC120559225
TU66513 other downstream 5183 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 394566 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1286316 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2101063 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2148117 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 293780 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 293780 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1729486 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3136557 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3287986 17839544 ~ 17886333 (-) False zbtb46

Expression Profile