RNA id: TU66555


Basic Information

Item Value
RNA id TU66555
length 221
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G49802
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14673628 ~ 14673848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accgcctcagcgtggctggtcctcagcgtggctggtcctCATAGTGGCGCCGcagtaaactgccgtgacctaacacGACACATACagagaacgtcgaaggtgtgttgttgttgccacagccagaagacacattttgtttcaaatgaagctggaggcagcaaaaaaaaaacacagctggctaaactatttaaaaatggcaggtTTGTTCAGGGCACCCCCCT

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0070997 neuron death biological_process
GO:1901214 regulation of neuron death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66554 lncRNA downstream 1627 14669453 ~ 14672001 (-) True G49801
TU66514 lncRNA downstream 128996 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 248013 14416391 ~ 14425615 (-) True LOC120558545
TU66442 lncRNA downstream 269841 14402710 ~ 14403787 (-) True G49739
TU66415 lncRNA downstream 270998 14400015 ~ 14402630 (-) True G49716
TU66562 lncRNA upstream 8862 14682710 ~ 14683985 (-) True G49807
TU66616 lncRNA upstream 171490 14845338 ~ 14853817 (-) True G49845
TU66637 lncRNA upstream 188947 14862795 ~ 14865747 (-) True G49862
TU66654 lncRNA upstream 210298 14884146 ~ 14885386 (-) True G49876
TU66656 lncRNA upstream 214927 14888775 ~ 14889514 (-) True G49878
XM_039800751.1 mRNA downstream 53489 14616611 ~ 14620139 (-) True spryd4
XM_039801487.1 mRNA downstream 82790 14565817 ~ 14590838 (-) True col2a1a
XM_039801488.1 mRNA downstream 82791 14565817 ~ 14590837 (-) False col2a1a
XM_039800136.1 mRNA downstream 122070 14539788 ~ 14551558 (-) False map3k12
XM_039800783.1 mRNA upstream 11197 14685045 ~ 14698017 (-) False LOC120559225
XM_039800785.1 mRNA upstream 11197 14685045 ~ 14697898 (-) False LOC120559225
XM_039800786.1 mRNA upstream 11197 14685045 ~ 14697876 (-) False LOC120559225
XM_039800784.1 mRNA upstream 11197 14685045 ~ 14697875 (-) True LOC120559225
XM_039800087.1 mRNA upstream 33570 14707418 ~ 14750021 (-) False LOC120558823
TU66513 other downstream 139023 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 528406 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1420156 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2234903 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2281957 12388981 ~ 12391671 (-) True fkbp1aa
TU66613 other upstream 171490 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 171490 14845338 ~ 14853817 (-) False G49845
TU67071 other upstream 1607196 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 3014267 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 3165696 17839544 ~ 17886333 (-) False zbtb46

Expression Profile