RNA id: TU66613


Basic Information

Item Value
RNA id TU66613
length 7259
RNA type TUCP
GC content 0.44
exon number 6
gene id G49845
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14845338 ~ 14853817 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaattTTATCAAGCCACAACTTTATTTCCATCTTGGGTATAAATTGTATAAACGAGCTTAAATCAGCAACCTTTCTTCAACCCTTTATTGCCAGGGTCCCATTACATTGTCAACTCCTGcaaaaggaacaaaaaaaaaaagtttaagatATGTTGTAAGAGGTTTTTCCTACAATTTAAAGAATTTCTCTCTTCTCAGGACAGAAATGTTGGCTTCAGTAAATTCAGAAGAACGAAAGTCACTGTATTATTCATCACTGAAGAGTTCTACATACACATGTATCTACAGACATCTGAGGAAACCATTTAAAATGGCCCATTGAACAGACTCCAAACCATTTTACTACCATTAATAGTTTTCAGTTTTTGAAATCTTACCATAATAGCATTGACAAtgtcgttgttgttgtttttcagggCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATGACGAGTTCGATATCCTTGACCTCAACTCCGGTCTCATCCAcctattaaaaataaaaaaaaggcagtgAATTTTTATATCTCACACGTTGAAACAAACTGCACATTTGTCAGTGTCCATCTTCACTTGATTAAAACTGCATCTTACCTCCTCTTCTTCGCTCTCCTCCTGTACTGTTGGCGTCTGTGTGTTTTCCTGGATGTTTGATACAGCTTCTCCCTGTACCTTGAATTTTTCTGCGGCAGCCAGCTGGGCTTGCTGGGAAAGATCTTCGATCTAGCTTCACCGAAGACGATGTATGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTAATGACAAACAAGATGTTCTTTGACTTGCGAATAGTGACCCTGGTGACCCCCGTTACCTGCCTGAGACCAAGCTTCGACATTGCCTTTCGTGCTTTCTTTTCACTGCGGCTCTGTTTGGCTTTGCTGACTGGCTCCTCGTCTATTTCGGCAGCTGCTGCAAGCTGAGcttgctgtgtctgtgtctgtgcagaGTCCTGTTCCTCCAGCTCAGGGACTGAGTCATCACTGTCTGACTCTGTACCGGAGCccTTGTCGTTCTTGATCACAGGCTCCACCTTGACTGGGGTTTTAGCAGTTGTGGGGACAGGTTTGGGTGTTGAGACGGATTCGGACGGAGTTTTACTGATTACCTCAACCTCAGGTTTAACAGGGGCAGGTTTTGCAACTGCCTCAGCAAATGTGAGTTTAAGGGGAGCTGGGGCAGGAACAGCAGGCTCAACTGGAGCAGGTTTTAAGGGAGCAGATGAAGGTTCAGCTAGTGGTTTGGAAGGCTTGACAACCACAGCTGGTGCCGCCTTAACCAATTCAGCCTCAATGACCGGCTTAGCACCCATCACAGGGGCTGGCTTGGTAACCTCAGCGGCCGCTGGTTTAGGTTCTGCAGCTGGCTTAGGAGCCTCCACAGGAGCAGGTCTGGCCTCAGCAGCTGGCTTAGCAGCTTCCACAGGAGCAGGTCTGGCCTCAGCAGCTGGCTTAGCAGCCGCCACAGGAGCAGGTTTGGCCTCAGCAGCTGGCTCAGGAGAAGGTTTGCTTGGGGGGGCCTCCTTAGCCTCAATTTTGGCTGGGGCTGTTTTTGGAGCTTCAATGTGAGCTGGTTTAGCAGCCTCAACAGCTGCAGTTGAGGCTTCAGCAACAACTTCAGCACTTTCAACAGGAGCAGATTTAACCATCGCTGCTGCAACAACCTTTACAGGCACAGACGTGGGCTCAATATCCGGTTTGGATGTTACCTTCACCTCTACAGTGGGTACAGGTTGTGGCATTTTAATTGGCTTCTCAGGTGGGATAAGTGGAGGGAGATCATCATCAGCAGCTGCAATAACAGGAGCAGCTTTTGATTGAGCAGGCTTAACTTCAACTGATGCGGGAGGGCCAGAGGTAAGAGTATCTGAAAATGAAACGGGAGCTGCCACAGCAGGCTTTGAGGTAACTTTAAAAGCAGCTGGGGCTGCAACAGGAGTTGCAGCAGCTGCTGGGGGTTTGTTTGGCTCAACTGGGGCAGATTTTGCTTCAACTACAGTTTGCTTAGGGCTAGCCTCTACATGGTTTTCATTTGCTGGTGTGACCTTGCACGCCAAAGGAGCAGGCACAAATGCCTCCCCTTTCTTAGCTTTGCCAGCCTTGACAACTTTTGGGGTGAAGCGGTTTGCCTCACTAGTGAGGCCAGGTGAGGTAGCTAAGGGAGATGGCACAGGTGAAAGGGGGGTAGTGGATTTTGGAGTAGATTTTGGTGAGgtgggagaagaggaagaggcagaCATGGAGGAACGTTTTCTTCTGCCAGGAACAGCCTTTGGGGCAGAGGAACCCTGCACATTCTTGGCATCTTTGCCTTTGGGCTTTGCAGGGCCAGAAGCTGCCTGAGGTTTCTGGGAGGAAGCTGGGGCAGGAGGTGTAGCTGAATAGAAAAATCACTCTTTTAAATCTTTTGGCAGGAGAAGGGGAAGTCTTACTCATGCGGATTAAATTATGACCAAACCAAGACGCAATGTTCTTGCTTAGGGTTAGGAAAAAGACACACCTGCCTAGCTTTAGTTTGATGCAAAACACTCAAAATGCAGACCATACTACTTACTTCCACACAGAAAACCACATTCTAAATTtagtgaaaacacacaaatcatATTTGCGATGAACATCGCCACATCACGAAATATCGCCCTTGCACATTAGCTAGTGCATAAATGCACCAGCTATCACTGAACTCGTGCTTTAATGTAGAACTGACCTGACCGAGAAAAATAAACTTATCGAATCCTATGCAATTAAACACAAGTACAATTCGGCATTTCCTCTGAAATCTGTCTAAATCAATATGGATACAAATATCCACTCATGTTACCACCTGCGAATACATATGCCCAACCAACTTAAAAAAGGTGCATTCAAATGATTGCGACAAAGTGGGGAGAGGGGAGCGCCTGCTTTTCAGGATAAACCAACCTGACAGGTGGCGAGTTGAAAGAGGTGGGCCTCCACATTTGGAGGACTCCTTTGACTGAATGGCCTTGGAGAGAAGTCTAACAGCTTTCTTGTCAAGTTCTTCATTTTGAGTACCCACGGCGACATTATCAACAGGCAATACTTCGTCCTGAGCTGCGACCAGGCAAAGATTCTTTAAGTTTTCTACCTCAGTCTTCGGGGCATTAGTGGCCTTCACATCTTCCCAGTTTGCAATGACGTCTTCATGAGCAGATTGTTTCGGATCATCGGGAATTTCTTCTAGCACTGCACTGGGCTTGCCTCCAGAGGCCTCCACTTCAACAGAAATCTGCTCAACCTCTTGGCTGTCCGATTCCTCAGCTGCAACAGACTCCTGACTTTGTACCTTCACAGACGAACCGGCTTCTTCATCAGTGGGTGGTCCTTCTGAGGAAACAATGGGAGTCTCAGCAGAAGGCACTGACTCTAGAGGAACTGGCGTGTCAGCTGAAGCACCGGCTGGGTCAGCAGTTGCCTCTTGCTGAGAGACAGGTGTTGCTGCCAACCCAGTCTCTTTAGTTTGCATGGTCATTTGACCAGCAGCTACACCATTTGCTTGATCACCAGACGTCTGAATGCTAGCTTCTTCAGGGGAGACTATCTCTTGAGCTGGAACAGAGGTTTCTGGAGGATTCTCCAGTGGGATTGCCTTGCTCACAGGAATGGCCATCTCAGGAACAGCCATCTCAGTAGGAGCAGAAGAATTCAATACTCCTACAGCTGATTAAGGATTAAGGCAGATTAAGCAACAAGAGTAACAGGGGGAAGGGCAATCACAGTAGTTGTTTGGCGAGCAATTCTACTTAAACGCAAATTTTAAGAGCTTCATGACTACACCGTGAAGTGGAAAAGAAAAAGGTGCTCCACACGTGAACAGAAAATACGTGTTTGTGAGAAGTTTAATGTCGCTTGGCTTGCGTTTTACCAAAGTAAAAGAAGGGAAAGTGTTTGGTGCACTacgtaaaacaaaaaaataacccCATGTCCCAAACTCCATGCAGTGTCCCTATGTGAAATAAACACTATCTATGCACAACTATGTATGAAAAGATATAAATCTATCGACTAACTAAAACCTCAAATTagacagtacagtatgtgtacatAATTTTACTGCTTTGTGGAAAAATTCACACTGCAATCTATTTCAAAAGACCTTTTTTTCTAAAGGAGAGCATTTGTCAGCATTAATAGTGTGAGAAAATGCCAACAAACTCAATCCCTATGAAATAATGACCCAACACTGGCCCTTATTTTGAGTAGTGTCAGTACAGACTCATCTGTGGTTGATTCTGCATCAGTATTTGCCCCTACCTTTGTCATCAAGGAAACACAttccagggctccagactaactttttgccttggttgcactggtgcacctaactttttttatttagggggacagcacaaaatttaggtgcacccaaatttttccttacATCGCTgttaacgctgaatggcgatacacgatatatagcgctgtattttctttattggGCAATAACCgatgcccggatagctcagttggtctatatagaggtttgactccgacctgcggccctttcctgcatgtcattcaccccctctttcatgtcttcagctttcctatcaaactaaaggccgaaatcttaaaaaaataaataaaaaacaaacgaaAGACATAGGGAGTGCaatggactgaagcgtatgctactcatagtgacggctgactcattatgaatgggtccagcacgggtcAAATGCACTTTGGCAGGTCAGCGGCAttacacacgtcttgtgtaggctatgaaatgtctgtatcgtcaatgcgctgcatttttataaactatgataatgtggccatgggtcacatctctcgccccaggtccagcaggctcaGTCTTACACGCCAatactcaacgaactgaagttagttgcatttaataacttctgtgtttttcgccgtggcagccgcaataacagagttaccagcggaaacactggtaccaatacatgTTTCCCTCTCATAATTAACAATACACaactgtgttaataacaattaaaactgtagacaaatgtcagcagtttggaCCGGCAGcactgtgtctctccatgttgcaagGGAGCGGGGCTGCGCGGAAGACAGATctaaacacaggcacggctttacagaaggaatggttcatgtaacgcaacattacaCATATCAATATAAACGACAAtgcttcgttcgtggagaggcagcggatgcgaggacattaggtgcaccggtgcgacctaggaaaaatcttagtcgcacccttacaaattttggtcgcactctagagccctgcaTTCATTGAAATGAGACGTCTTTCCTTCTCAAACGTCATCTGAACTTCTCTGGTCTTTTTTTTGcaatggagtattttttttttttttttttataaggatAATGTGATGTTAAGTCCAAAATAAGTGCAAACAAGTTCCACTGCTGCAACTAATCCGTTGGTATAAAAGTCCCTGCCCCACCCCTGAGCAAGCACATCACCCATATACAGACCCATTTCTGGAGGAAAACACTGGTTTACATATACTGGTGAAAAGTGACACAAAAGTATAAAAACCTGTGTAGTTCACAATTGGAGAATTATGCAGAATAGTTATGAGCCACTGTTtaatacaaatgaaatgtttatGCAACACGCGCCCTGACAAAAGCAACACATTCAGGATATGACAGTCTGGACTTCAGACAAATCCATTATTCACTTTATTAACCAGATATTGTCTAATTTTTGGTCAAAAGAGCACCATGTACAACATGCTAACTGATCAAAAGATGTCAATtatcattacattatatttacatGCCAGTATAACCAAACTTGAGAAAAGGACTTACAAGCAGTATGACCCTACAAATATAGCTTgcgtttaaatttaaaaaaaataattatcctACAATAAGAGGTTACCGTCAGGCTAAAATAAACATGCAACACAAAATGATCTGTGCCAGACAACAAATCTACACAAAGTAGGTTTTCAAGGCATTTAGTGTGCACAGGGAAAACCACTCAACACCATGCATTGTGGGCTAAATCCAGTTGTCAGTGCAAGTCATCGCACACACCATTGtgagtttgtgtaaataaaaagaGGGGGGTCCTGGATTACTCTTTTCAAACCAAGGCACTCAACATCACCACTGCAGATCCCGCAGTGGGTAAACTATGGTTACAAATGTCCTAACACAAGGCTGGGACAGTCAAAACAACCATCACCTGTTACATCAACTCAATGTCCAGCCAGCTGAGACAACTACCTGAGCCAAATAATTGTCCAATCATCAATATTGTCCTTTTACTTAAATTACCTTCCATAGATGGCCATTTGCTGAACAATTCACCCGTTCTTCGAGTTCCAGCAAGGAAAACAGGAAAATCTTTCTACATTCCTTGAGTTCCAGGACCCCGTTGTTTAATATGAATTATTGCATGCACATTTATGATAAGGTAAAATATACGAACCGGTCTCCACTTGAGGCTGCTGCATCTCCTGCTCTGTGACTGGGACAGTTTCTGTAGCTTCACCAGGCATGGTTGCTGCTGAGGAAAAGGCAGTTTATTAGCTTAAGCCAAGTATTAAAAACTAACGTTACTAGTGGTGTAAGACAAATTTAGTCAAGACGTGTGGTACTTAACGGCTCACTGACGTTAGCAGGGACTAGTTAGCCGATTCAGACACTGACTTGCAGTTGTTCACGTTTTAGCTAACGTAAGTTGAACAGGTGACGGAGCCCATGCTTTAGCCCAGTCTTTAACGTTACTCTCTTGTGAAGCAACATTTAACTAACTGCTTCTGACAGCCTCAACGGGGGAAAGCTAAGAGTCACACCATCGCTTTTTACTCAAATTTAAAAAGTTGTCACACAGATCAACCTAACACCACTTGTCAGCTCACTGCGGCCCTGACTGGCTGCTAGTAAACTGGAAGTCATGTTCCCCCATTTTGAGCAGGTAATCGGTAGTACAACGGCACATATATCACTGAAGAGAGGCACAAAATAGAACCAATATCTGTACCAGCTTGATGACACTACTTTACTTTAAGGCATGAAACGTGTAATACAGACGGTAATAAGTGAAAAACGGCTGGATGATGTTGGATTTTCAACGGAGACACTCACCGACTCGGGACGTTATATCCAAGATGGCTGTGAGAGAGAAATTCTAACCTCTGTTTCACGGTAATATCCTGTTTAGAGCGGTCTTCTTCTTCCGGGTTGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66562 lncRNA downstream 161353 14682710 ~ 14683985 (-) True G49807
TU66555 lncRNA downstream 171490 14673628 ~ 14673848 (-) True G49802
TU66554 lncRNA downstream 173337 14669453 ~ 14672001 (-) True G49801
TU66514 lncRNA downstream 300706 14539830 ~ 14544632 (-) False map3k12
TU66447 lncRNA downstream 419723 14416391 ~ 14425615 (-) True LOC120558545
TU66637 lncRNA upstream 8978 14862795 ~ 14865747 (-) True G49862
TU66654 lncRNA upstream 30329 14884146 ~ 14885386 (-) True G49876
TU66656 lncRNA upstream 34958 14888775 ~ 14889514 (-) True G49878
TU66660 lncRNA upstream 48272 14902089 ~ 14902859 (-) True G49882
TU66771 lncRNA upstream 218020 15071837 ~ 15073424 (-) True G49977
XM_039801574.1 mRNA downstream 11407 14823706 ~ 14833931 (-) True LOC120559665
XM_039800515.1 mRNA downstream 31131 14805105 ~ 14814207 (-) True ddx23
XM_039800087.1 mRNA downstream 95317 14707418 ~ 14750021 (-) False LOC120558823
XM_039800085.1 mRNA downstream 95317 14707418 ~ 14750021 (-) True LOC120558823
XM_039800783.1 mRNA downstream 147321 14685045 ~ 14698017 (-) False LOC120559225
XM_039801430.1 mRNA upstream 51234 14905051 ~ 14920772 (-) True LOC120559597
XM_039801140.1 mRNA upstream 72471 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA upstream 72471 14926288 ~ 14991890 (-) False LOC120559456
XM_039801142.1 mRNA upstream 72471 14926288 ~ 14991883 (-) False LOC120559456
XM_039801144.1 mRNA upstream 72471 14926288 ~ 14991883 (-) False LOC120559456
TU66513 other downstream 310733 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 700116 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1591866 13252412 ~ 13253472 (-) False LOC120558587
TU65695 other downstream 2406613 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 2453667 12388981 ~ 12391671 (-) True fkbp1aa
TU67071 other upstream 1427227 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2834298 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2985727 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 4026548 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4845956 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042849 False 6491 mRNA 0.41 7 NC_007134.7 17865554 ~ 17876777 (+)