RNA id: TU66656



Basic Information


Item Value
RNA id TU66656
length 642
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G49878
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14888775 ~ 14889514 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TATCCTTATTGTTTACTTTTTTAGGTGTTCTGTAAATGTAACGTGTTAGAATATAAGTGGTAGTGAATGTGTTGTACTTGAGTCTCTACCTCTGTAGAGCAGCTGGGAGTGATGGCAGGACGTTCCCAGCAGCATGTGCCTCAGACAGGACTCTCCACAGAACTGCAGAGCCCCGCCCAAACACTTCAGCATATTTCCATCATGcactcaaggacaccgttCAGTGATACATAAGACATTGATATACAATAGGGGTGcacaattcagaaaatgtcacgattcgatattgatttttaggctcaagatttgattcaaaatcaattttcgattcaaaaatgATTCACGGGTGCCCAGATAgcccagttggtagagtgggcgcacatatatagaggtttactcctcgatgcagcgggcccgggttcgactctgacctgtagccctttgctgcatgtcattctcccctctgtctcccctttcatgtcttctgctatCCTATCAAagtaaaggctgaaaatgcccaaaaacataatcttaaaaaaaatttattaaaaaaaaatcacagtatgtaaatgtagttacttttcccatgtgattgcagtagacacacaattatataaaataaaaataaaaatgatttgaaTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66654 lncRNA downstream 3389 14884146 ~ 14885386 (-) True G49876
TU66637 lncRNA downstream 23028 14862795 ~ 14865747 (-) True G49862
TU66616 lncRNA downstream 34958 14845338 ~ 14853817 (-) True G49845
TU66562 lncRNA downstream 204790 14682710 ~ 14683985 (-) True G49807
TU66555 lncRNA downstream 214927 14673628 ~ 14673848 (-) True G49802
TU66660 lncRNA upstream 12575 14902089 ~ 14902859 (-) True G49882
TU66771 lncRNA upstream 182323 15071837 ~ 15073424 (-) True G49977
XR_005639238.1 lncRNA upstream 243138 15132652 ~ 15137753 (-) True LOC120559280
XR_005639236.1 lncRNA upstream 324456 15213970 ~ 15214624 (-) True LOC120559278
TU66790 lncRNA upstream 328547 15218061 ~ 15218563 (-) True G49991
XM_039801574.1 mRNA downstream 54844 14823706 ~ 14833931 (-) True LOC120559665
XM_039800515.1 mRNA downstream 74568 14805105 ~ 14814207 (-) True ddx23
XM_039800087.1 mRNA downstream 138754 14707418 ~ 14750021 (-) False LOC120558823
XM_039800085.1 mRNA downstream 138754 14707418 ~ 14750021 (-) True LOC120558823
XM_039800784.1 mRNA downstream 190900 14685045 ~ 14697875 (-) True LOC120559225
XM_039801430.1 mRNA upstream 15537 14905051 ~ 14920772 (-) True LOC120559597
XM_039801140.1 mRNA upstream 36774 14926288 ~ 14991890 (-) False LOC120559456
XM_039801141.1 mRNA upstream 36774 14926288 ~ 14991890 (-) False LOC120559456
XM_039801142.1 mRNA upstream 36774 14926288 ~ 14991883 (-) False LOC120559456
XM_039801144.1 mRNA upstream 36774 14926288 ~ 14991883 (-) False LOC120559456
TU66613 other downstream 34958 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 34958 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 354170 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 743553 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 1635303 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 1391530 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 2798601 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 2950030 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 3990851 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 4810259 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile