RNA id: TU66970


Basic Information

Item Value
RNA id TU66970
length 1984
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G50136
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15879334 ~ 15896000 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATGCCAGGCAtgtattgtatttatattttctataattctttattttttcagtcTTTTTCTGTTTGTATAACATAACAATCGTGCTTTATCATGTGACACCATTTAGATACATATCatgtttatattatgttttaCATTAGGCAGTGAGACAgttaaaaatatacaaaacaatATTGTTTTACTAGACatagtttctattttttaatataatcgTCAGCATCTTCATTGTCATCATCATTTCGTATATTTCTGTAAGATATGTGCTTTAGCTTCTGTGATCAAAATATTATTGCAGAAAACAGCAACtccattttttcaacatttagaCAATAACTTCCAATGTATTACAGACATTTACAGTTACATGTTTTACACAGTACAGTTTTACAACAAAGTTCCAGAGAAAACTGTGGTAGAGTAACTTTATACAAAATTCACAGGACATGAACTGTAGCCATTTCACATTTTCGCTCAGTTGTTTTGCTTTTCAAAGTAAACATGTTCTGTTCAACCAGATGCCTTTCACAGTAGCTGCCATAGAAGCAAACTAACATTGTCCTAAAACGCCATGGCAAAAGTCTGGGGAAATTAAAGCTTTGTGCTTTTCACTAGTAAAGCAAagacaacataaacaaaaagagaaacagacCACTTGCTTACTGGCCTGCACTTATACATCTACATATGTATTGCTGAATACATATTGATCAAACTATAATTGATCATTAcacataaagaaaaaataatgacTGTACTTAAACACAGAGTTGGTCCAGGTTTTTGTTCTAGCATACAAAGTTGTATTTTGTAGTTCTGCCCAGTCATGTAAACAGACTATGGCTTAGTTAAAATTGGTTGGTTGGCTTAAGGCCttctttgttcttcttcttcttttctttttttttttgtaaggagACATTTCAGAAATTTTCACTGATGTTCCTGAGGAAAGCATGCAAAACGTAAACAGGATTGACTGTCAGCATTAAGGGATAGTCGATTGTTTGTAAATCATTTTTCTAAccctgtgcttttttttttctttttcttttgtactTCATTGTACCCTGTGCTTCGCCAACCAAACACTAAATGGCATAGTTTTTGCTTTTGTCTGCCTATTGATTTTGGTCCTCCATCCCAACACATATAGTATAAAACATCCTAAAAATAATTCTGAAAATGTTTCGATCACATAaaagttttccctttttttttactgaaaaaaaggaaggaaaaataacagtctctctcacacacaaaatcttttgcAACAGAGCTCCTAAACATGAACTTCTTATTGGCATTGTGCTTACTCAGAGCTCCCCGCTCGCCTTGTGGCCTGTAGTTTACCTCACAGAGTAACGTTTGGAAAAGAGACAACTGTGTGAGGTTTAGTAAACATCCACAATAAAATTGACGCCATCCCTTGCACTCTTCAATGATGTCAATTTTGTTCACTACTTTATCTACTATATTCACACGGTATTTACTTGATTCATGAAGATATTCAACAAATCTCTAatctatatgtttttttcttttctcacagTATTACACAGtatgttaacatttttttttttttattcagatttATGGTTGTATTTATGAACACTAACAGTCTTTGATATTGTTTTCAGATTGCAAACCAACAATAAGACATCATTGGCTTGGTTTTACAAATGCAGAAAAATTAAACATGGTTTGAAAATCTGTTTTGATCACATATTGCCCCTGGAGGTAGGTGAATCAATTAAAATCTTGGAAGTCCTTTGTAATGTTCTCTTTTGTCTACATGCTCCATGAGGGTTTCTTTGCTGACTACACGTTGGCCTCGGCATTGGTCAGGTTAGAGGTGGGGCTTGTTGGGTTCGGGGGGTTAACGTGCTCCGTTGGGCTAGCTGGGTTGGGTGGTGGGCTGGTCGGGCTAACAGTTGTGGTGGGGGGGTTAGCCGGACTGGCTGTGGTGGTTTTAAGTGTGT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66923 lncRNA downstream 190907 15685011 ~ 15688427 (-) True G50104
TU66918 lncRNA downstream 214226 15664770 ~ 15665108 (-) True G50101
TU66805 lncRNA downstream 557413 15321709 ~ 15321921 (-) True G50006
TU66804 lncRNA downstream 559489 15319406 ~ 15319845 (-) True G50005
TU66803 lncRNA downstream 576697 15302398 ~ 15302637 (-) True G50004
TU66991 lncRNA upstream 34121 15930121 ~ 15933298 (-) True G50153
TU66980 lncRNA upstream 56530 15952530 ~ 15956672 (-) True G50143
TU67119 lncRNA upstream 390321 16286321 ~ 16379623 (-) False G50230
TU67118 lncRNA upstream 477144 16373144 ~ 16379623 (-) True G50230
TU67178 lncRNA upstream 520921 16416921 ~ 16418613 (-) True G50278
XM_039801808.1 mRNA downstream 12148 15863022 ~ 15867186 (-) True tnnc1a
XM_039801848.1 mRNA downstream 55528 15799940 ~ 15823806 (-) True bmp7b
XM_039801223.1 mRNA downstream 80845 15792178 ~ 15798489 (-) False irf10
XM_039801222.1 mRNA downstream 80845 15792178 ~ 15798489 (-) True irf10
XM_039801935.1 mRNA downstream 122126 15741216 ~ 15757208 (-) False LOC120559871
XM_039801509.1 mRNA upstream 14598 15910598 ~ 15920543 (-) True vgll4a
XM_039801503.1 mRNA upstream 41829 15937829 ~ 15951030 (-) False raf1a
XM_039801501.1 mRNA upstream 41829 15937829 ~ 15950232 (-) True raf1a
XM_039801505.1 mRNA upstream 41829 15937829 ~ 15950230 (-) False raf1a
XM_039801504.1 mRNA upstream 42880 15938880 ~ 15950232 (-) False raf1a
TU66613 other downstream 1025517 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1025517 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1344729 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 1734112 14140380 ~ 14145222 (-) False LOC120558710
TU66001 other downstream 2625862 13252412 ~ 13253472 (-) False LOC120558587
TU67071 other upstream 385044 16281044 ~ 16283856 (-) True G50217
TU67800 other upstream 1792115 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1943544 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2984365 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3803773 19699773 ~ 19699894 (-) True LOC120559929

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU227876 True 2480 lncRNA 0.37 3 NC_056721.1 841719 ~ 845010 (-)