RNA id: TU67118


Basic Information

Item Value
RNA id TU67118
length 5753
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G50230
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16286321 ~ 16379623 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctctctcaaCATACAGTCTGATGATTAGAGTGCAGCAGGGTTGGGTGGGGTAATGCAGTGGGACATTCAGCAGGCAGAAGCAATCCCACACAGTTTGAATACAAGCCTTTGACAATCAGAGCAGATTCACCAGGGGGCAATATTGTCCAGAGAGAAGTGAGATGAGCAGAGTAGAAAGTGTCAGgactgctcctcctcctcctccgcctctGTAATCTCAGCTCCTTCCGTTTAAACACTGCATCCAAATGAATATGCAAACAATAGTTATTCCTTCCTCTGCTAACCATGAGTTGGCAACGAAGGAGGTGGAACAAAACCAGATACAAGTGACAGAGAACAGAAATCTCTTACTACAGGAAGTATTTCACCAAAGCAGAAGACTCTGCATAATATCCTATAAAAGTCCAATTCAAACTGAATTTATGGAATAATATACATCAAAGAAAGCCCTCCCCCGCCACCACCTCTAaacagtccaaaaaaaaaaaaaaattacaaatataaaCTACAAGAAAACTGTACAATTCACAGCTTGGCAGACATCGGGGTGCTGAAACCTTTCAAATGTGTGGAGATGTAAAATATTTAACCATTGTAGCTGTATTGTTTCTTtgctttgtgaaacatgaaaagTTGGCCATGCTTgtcagtgataaaaaagtacaGGCGGTGAAACCCACTATATACAGTGTAGGAAACTCTTAAACAGGTTAGAATTAAGGGGgactatactgtatgttgtgcaAATCTCCCGCATCAAGTATCATTTGAATTCTGAATCACTgaaaagaaaatttaaaaaaaagaatgctgtCATCCAAAGCAACTTTGAAAATAAACACATCAAAATGTCAACAGGGCAAAACACTGCTTTGTGAGGGTCTCATTCGTTAATTTAATTTGAGGAGTTGTTTTCATTTAAGTACCATCTCATGTGACTATAATGCTTAACTGTACAGTGGAATCACCTCAGACAATAGCAGCATTAAAAAGTCAAGCTTTAAAcatcaaataatttaaaaaacatcagACCTAACTGGTGATCGCACAAAACATTTCACATATAATGTATGCTGAGTAATAGGATAGCCAGGTTGAAAGAACATTTAGCAGTAGTGACTTGTTTGCTTGGTGGTTTGTAATGTTTATAATTTGCAAGGTAACTTTTGTCTGTTGCTTGGTGATTTGTAACTTTGTTCAACTCTTCAGCTTGCTCCTGTTGCACACATCAGAGATAAGGCTTGTGGCAAGGCCACGATCAAAGCTTTGTGGAGGGGGTTAAATTGCACTTTTAAGCCTCAAGCCTTCACATATTAATTGCTACATTCTGATCAGAACACTTCCAGAGGCATATTCTGTAGAAAGAACTATGCACATTATATATGGCTCTGGACACCACCTTTCCTCTGAGCACAAGGATACAACATTGCCAACTCTTGTGCTGTCCAATGCATCAGTTGTCCTATCAAAAAGAGGCTGTGTCCGACTGAACCATTTGACCCCAAAGAGTGGATTTGGCTGCTggcgtaaattttttttttttcttctctcatcAGTCGTACATTAACCATTTGTTTCTGCAAGGCAACGGTACATCTCACCACTATGGCAATCCATCTGTCACAGGGGTGGAAAgtaaacaagggttaaaacatgattttattattttaaataagaGCATTTACTGTATTAAAAGTGCAGTTATACAAGGGCATACAtatgtaaacaaaaaacaaaagtgtcaGTAATGCATAAAAAAAAGGCACTGCACTCAAACTATGATGCAGACATGCTTTGTTTCACAGAAGAACAAATTATCTATAAATCAATGTTCAAGGCACTACATTCCTTCAAATATCTTCATCATAAACACCGTCctgttactgtatctgaaaCCACTGTTATTTGGATTCCAATGTAGTGTATAGTGTACGTAATACAGAGAAAGGCAAAAATCAATGTGTAAACTGCAGTTATAAagaataaagtgaaatgttttgtGACTGCAGACAAATTGTCTTGTATGGCTGAGTttagtcaacacacacacacacacacacacacacacacacacacacacacacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtgatgTATAAAGAATATCAACACTACAAGATCAAATGATGTACATGTGTGGCTCTGGTGAACCAGAACAGAGTGGTGTTGGACAATCATGCCCATACACACTAACAAATATTAGTTAGCAGATTAAGTAGTCCTAGTGGTTTTTGGACACGGGCCATTCTCGGAGTCGGGCATGACCAGAGGGTAGGCTTGGATCCCTGCGTTTGCCATTGTGGCATAGGGCATCATTCTTGCAGCACCAAGCAGGCCTACTGGACCCACAGACCCGACAGGACTAGGCATGCCAGGCCACTGCTGGGGGTAAAGAGGACCAGGAACCATCCCGCCATAGGAGCCTGCTGGCAAAAGGTACCCAGCAGGGAGCATAGTTGAGGAGTTGGGAGCTAGAGTTGTGGGCATACCAGGGCCTAAAGCAGCTGTCAGGGGGCAGGAAAGAGGCAGCTGGAACTTGCGTGGACCAACATGGCATTTCATCTCATGTGTAGCTGCTCCCATGGGTGGCGCTCTGCCCTCCAGGTCCTGCTGGCGTCTCTGCTGTTTGATCTCtcttgttgttgctgttgttggtcTGGACCTGAGCGAGCTGTGTGATTGGCTGGGGAGATGGTGACGGTGTAGCTGTGGTGAGTGACGCCTGTGTCTGACTGGAGGCTGTCTGAGCTGTGGTGGTGTTGAGAGTAGACCTACTACTGCGCTCTTTGCCTAGACATAGTCGTTTCAGAGTGGACCCTATAAAAAGGTAAAACAGCACAAGACAGAAACAGTTAGGCCAGGACACACTGCACACCACAAGTATGTGGAAAAGCTGCTTCAAAAGCACATTCAGCTATCAAAACAattggggagagagaaagagggaaaaggaggaCAAGGGGTTTTAAAAATCAGTGAGGAGGACTGGAAGAAAGAGCCTAGGTGTTCTCTTTTAAATAGACAatcatttgaaaagttgactatTAGAAACTACCTGACAAGCTTAAGAGAGAGCACTCCTAGCTTTGGTTTCTGATGTTGCGTGTTAAAGTTCCCTCATTTATAGCAACAATGTCAGGAGGAAGACCACCATATTTTATGCTGCTTCTTAAATTAACTGAATACATTATTGAATACAACAGAAATATCTTTTTTGTGATGACAGAAATCTGGTAAAATGCAGTCACTATAAATCTTAAATTGCCTTTACAAATAAAGAGTAAAATAATCTGTGTTTACGGATTTGTAAAATGTATGAATGATATGGTCCATTCGTTAGTAGGGAGAGACCAAGATAATTTTAGTTTTCTAAGAAAGGAAGACTGGAGCCTGGATTAAAAAGAGATCCTTTTGTCGATGTGAGAATGCCTGTGAAACAATGTgaaaccaaaataaataaagcttcaAACTAAAAGAGCACACAGATACTAGGTGAAACTCATCAGAGTCAACACTTGTCAGAAACATGCATGTAACTCaggagaggtggaaggagaaaaaaaaaaaaaaaaaaaaggagtaatATTGATGATACAGCCCTTCATATGGCGCAGCAAGCCTCCATCAGTGCCCTGCCTGGCGCCTGCACCATGCACGTCTTCTCCATCCAAACATGAGGGACAAAGAGAGCCCTGCCTATCAGGGAAGGGCTggtttttttctctgtgttagTATACAGATGCTTACTGACTTGGGCAAAGTGCCTTGACTTGGGAGATGTTACACAATCAAAATTAAgagtggatggaaacacacaacaaataaaGGTTTTGGCATTCTCTCTTACACATGTACTGACACACTTGTGCAAACAGGCACACTGTCTTGTTTTAGTTCTGACCTCAGGCCCATGTTTGGAGAGATCTAGCCCCAGTGTGATTGCGGGGTCTGGTATATTTTAAGCCAGAAGCACTGCACAAAGCATTTGTAGGAGTGGGACGGGGCATTATACCCACAATTGTATGGTTATGAATGGAACAGTGCTTCTGTAAATTGTGGATGATTGCCAGAGTACAGATAAATACCTATAACATCCAAGTTATTTGCGGCCTGGGTATTGGaggccccacacacacacacacgttccttTTCAATCTTCATGCCAAGAATCTGAATGGTGTCCCGACTCTTTGGGGTAATTCTGAATTTATAGAACCAGTTACTTTTTGTTGTACTTCATTCTTTCTGACCACCAGAGACAGTGCTTCCCACCTAGCCTAGGaaaaccctgatgaacttccagcaaatttgagatttgctctgcaagtcagtctggccaagagcccattcaagcccatttccaatttttccaaatcgaggcaccaatcacaaccgttgaggcgggctttacacgatgacgatagcgcagcgacagcAAGCAGCTTTTCGTTTACATttaacatgacggccaccgctgtcacttctacgtcacccggatcattggtctgattggttgaaggactatccaattgcgcccagaggcatttgagcggcgtccgttggtgacgcccctttggaaatgtgctgcgaatgaagcttgcccagacccactctaggttacaactgagaagggtctggtgtcaaccaggctatttCCCATCTGGAGGACTTATTAATCAAAATCCGGTCATGTGAAGCAGTGTTATGCGGCGATATAGCAGTTAATAAAAGTCTGTTGGCCATCCTAGCAGCGGGTTTCTATTTTATAACCCTTGACTACAGAAGTTAGCAGCATGCATTAGCTCAGAGGGCTGAATTGGCTTGTATACTTAATTACGTGAATGCCTTTGTCACCCTAGTCTCgcaatgccagaccttcctccacagtgctgcacaggagggtctggctagtccccacagcattccgggataggagaaaaatgttagaaaatgctctggtttattggcatttctttaaaccaatcacaatcgtcttgggcggtgttAAGCAGCGGACAGAGCCACTCTGTTAAACATGTGTAGCGGCCTGTCTTTGTTGGTACTACTACAACTGGGGGGCACCAAAGTCAGAAATTTCAATTCTACACAGTGGCTTTAATCAAATTCACATAATGGCTCTTTTCCAGTAAGTGACAAACACGACTGGGAGCCTGGCCCTGGCTATTGGCTATGGAAATGAACCAAAAGCGAAATTTTCGACTTTTAAGTGTCCACAAACACTTCTGCACCAATTACAATGTCTAACAGCAGCAAGAAGTAAGGGACTTCCAGCAAAGTCATAGGCCAAAACACAGTCTACACAGAAATGTGACCTGCTTCACCGATTGCTTGAAGatgaaaaagaaacatttcctGGCTGCACAAGCCCTTGATTCTGGTGACGTGTGCCTATGTTAGCTAGATTCAGTTGAATTTGTGCATGTGCTGGATATTCTCTGGCAGCCAGAAAAAATATAATACAGACCACAAGCTTTGAGGTTGTTGAGGGAGGGGGGCGAGGAGTAGGGATAGAAAATGGGTGATGTATTTCAGGTGAGTAGGCCTGTGAGGAGGGTGAAATAGAAGATCCACtatattacagaaaaaaaaattggttgatagaagagagaggcaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66980 lncRNA downstream 416472 15952530 ~ 15956672 (-) True G50143
TU66991 lncRNA downstream 439846 15930121 ~ 15933298 (-) True G50153
TU66970 lncRNA downstream 477144 15879334 ~ 15896000 (-) True G50136
TU66972 lncRNA downstream 483027 15886890 ~ 15890117 (-) True G50138
TU66923 lncRNA downstream 684717 15685011 ~ 15688427 (-) True G50104
TU67178 lncRNA upstream 37298 16416921 ~ 16418613 (-) True G50278
TU67316 lncRNA upstream 200453 16580076 ~ 16580982 (-) True G50371
TU67324 lncRNA upstream 281375 16660998 ~ 16663045 (-) True G50378
TU67328 lncRNA upstream 286427 16666050 ~ 16679676 (-) True G50382
TU67335 lncRNA upstream 334438 16714061 ~ 16714748 (-) True G50389
XM_039801418.1 mRNA downstream 200112 16166305 ~ 16173032 (-) False ptpdc1b
XM_039801416.1 mRNA downstream 200112 16166305 ~ 16173032 (-) False ptpdc1b
XM_039801417.1 mRNA downstream 200285 16166305 ~ 16172859 (-) True ptpdc1b
XM_039799246.1 mRNA downstream 211131 16154061 ~ 16162013 (-) True LOC120558319
XM_039800936.1 mRNA downstream 277341 16066540 ~ 16095803 (-) True nup210
XM_039799887.1 mRNA upstream 44597 16424220 ~ 16425947 (-) False LOC120558718
XM_039799888.1 mRNA upstream 44597 16424220 ~ 16425947 (-) False LOC120558718
XM_039799886.1 mRNA upstream 44597 16424220 ~ 16425947 (-) True LOC120558718
XM_039799881.1 mRNA upstream 46447 16426070 ~ 16429565 (-) False mbd4
XM_039799882.1 mRNA upstream 46447 16426070 ~ 16429564 (-) False mbd4
TU67071 other downstream 89288 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 1519327 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 1519327 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 1838539 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2227922 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 1308492 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 1459921 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 2500742 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 3320150 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 3321707 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile