RNA id: TU67479


Basic Information

Item Value
RNA id TU67479
length 3494
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G50483
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17071122 ~ 17074733 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCTGTTACATCATGTAGAAATAATCCAGTCGCAGTCTATATTTAGATGAACTCACCTGAGAGGCCTGGACGATGATGGGCACTCCTAAAAGCCTCTGGCCAGTCAATCCAATAGCCAGTGGTACAGAAGAAGACTCCACAAACTCTATGTAAGCGATGCCCTTTGATCTCCTGGAGTTTCTGTCTGAGATCATTCTCACATCTCTTACCTACAGAGAGTAACAGCGACAATTTAAGAGATATATTCTACACACAGACTTGCAGGATTatacgtgaaaaaaaaaaacttgaaaatcaCTGACTTTTCCAACAGCTGAGAAGAAATCTTCCAGGTCTCGAGCTCTGATTCTTGCAGCGAGCTGCATACAGAAAACTGTGCGGGCATCCCTCTCCTCTGGTGTTAAATTGTCAATTGGTTGCCTTAAAAAGAGAGGggcaaaacattgaaaaaggaaGGCCTCTGGAAAGAAACTAATGAATAATTGTTGAAATTATCAACACTAAGAAAGTAAAATCAGACATACTCCCTGATTTTGTTATACGGCCCGATAGCATCCTCAAAATTTCttgaataaaaaacacattttcaaagaTCTGTTAAAAACCTCAGTGAGTTTGAAGAAAATCACTGATTTGAAGGTGCTATAACAAAATCAGGTAATGTACCCTCAGAAAAAGCAGTTATGTTAAGACTCATCTCACCTGATGGGACTCTTCTCTTTTTTCAAGGGGCTCCGACTTTTGGAACGTTTCcggctaaaatataaaaaaggagaataattactttaatttttaaataaagcTGAAAAATTTAAGTTTGGACGCGCGCTTTGTATGAGAAAAGATACAGGGTCCTGTTTTGGCCGTTTACATACAGCGCTGTGTGGGCAAAAGGCAACAAGAGGGCATTCAAACTTTGACGTTTAACATTTGTATTGCTAACACTGACATCTACTGAAGTACTTTCACTGCAAAAACTAGCAATCAAGTAACTTTCTGCTCCACCATCGCAAATGCATCTGGTTCTCCTACAGAGGCAACTTTTAACAGAAGACATTTTCACACGTCACAAGTAGGAAACACACAAGTGTAAATGACACAATTAATTCCATGAAGTTGCTTCCATTTCAGAATGTTGGTATTAAGCATATTGGCTCGTTCTCACGCCGTCATGACTCATTCCAACACTTGAATAGAACCATCGTCAATGTTGTGCTTCTCCCACTATGacgagtcaaaatgtctgctgtgaaaaagggtTAAGATCAAGTTATACATGGTCATTGAGGTGTAAATTAAATGATACATTTTACCAATGAGGTCATGGTGGTGATTTTGTTCTAGACTGCATTATATTGCAAGGCATTTCTAATATTTTGACACCTTCATGTATGGGGAGGACAAAACCATTAGATACACTTCTATAACGTAGTCCAGTACAACACCACCTTTACCTCAATGATTGAATTTACACATTTGACAATTTCCCCAAAAACAGCATACTATAAGCTTTGTAAAGATAGAGGTTACAGCCAAACTGTTGCATTGGATTGCATTATATTGCACAGGTGTATCTAATAAAGTGGACACAGTGTATACGTCATTAAGTATAAAAGGTCACATACACTGGGCTCTTGCGTGCTCTGTACCGGCCAGAGCGCTCCTTGCTTCGGGAGTTGCTGCGATGGCGTTCTCTGCTGCGGCTTCGTTTTCTTTCTCGGCTCTTGCTCCTCTTCTTACCcttctttttgtctttgctTCGGCTTCTTCTCCTCCTAGAGCCTGGGCTTCGGCTCTTGCTTCGGCTCCTCTTTTTCCTTTTTGTTCTGGTCGTCATGTCCATTTGCATGAGAGGACTTGATCTCATCCTAAGCAAGGTTGATAGAAGAACATCATGAGGACGTAGATGAAACATTTCAAGTCGTCAAGGTAAAGGGGATGGGGTGGGACAAGAGAAAATGCAGAATAtattcaattaataataataatacttcaAAACTTCCTACTGTCATGTCTGGACAGTGTCCTTCCACCACCCCAATAGCTTCCCATcccactcctgtttttttttttttacaaggctGCTCAGTACTTATGCAACAAAGCAAAGGGAGAGTGTCCAACATATTAGCTGAGTTCAAGAAGCTTTGACAGAAGTCAGATCATCTCCACCATTCCCCTTCTTATATGTCGTACCAATGCCACTATTTGTGCCTAATCATGTGACCACGCATGGCCCACTGCCACTAAAAGAGATCCTGTGTGGTTGGTGTCAGTCCAGTGATCTTCACCCATTTTCGTTCTTGGACTGTAAGAGCTCGATGCCACCTCTGTCACACATCTTGCCCTGAAGCAAACAGGGATTCACACTTCTTAGTAATATTgacgccaaaaaaaaaaaaaaagaataaaaaaaaaaagaaaagaaataaatccaTCAATTCAGCCACGTGTTACACTGCCATTATCTATAGTAAGTAATATTTCCAACCTTTTGACTTAAGGAATTATTAACTACTGAAAATAACTTATAATACAATGATGCTAGATAGAAGTGTCTATTTTTACAGTCATTCTAGTAATATATAAATATCTGTGGTATCGTGTAGCATGCAAAATCAAGATGCTGATTCACATTACAGTTGACTATGGCAAAGAGGCAGTATTCATATTTACCAGCAAGacaaataaatatacattaCAATAATTCACCTGTATGTTTGCCATAAAATCATGATATGGCTCAAGTGTTCGCACAATGAAGGTCCACAATCTGCATTTTCAAGCATACTGTTGTCAAACTACAACTATTGGATTTAAAACAGTTATAGATTTATACAAACACAATTCAGTATCCCTTATTAATTTggggaaattatttttcttAACAACTTCATACATGATTCTAACTAATGAGCAATTTAGGGTGACAGAGTGATACATTTTTATCCAAGGCACAGTGtaaaacatttgttttccaTTTCAGAACTGGAGTTTAAAACTGACTATAGGACTGCACGTTCTGAAACAGTGATGGCATGCAGATTGTAAATCTGAATACTGCCTCCTATGCTGGACAGGTAAAGATGGGCTTATCAACCATTGGCATTCACCTTGTTGCAACCGAATAGGGATTGGATGTTCTAGGTTGAATCTCTTTTAGTCCTAAAGTGAACCACAGTACATCAGTATATGCACAATAACTACcttcctttttttcacagttcacAGTGGAATCAAAGATGAATTCATGGGAGTAGAGGTGAGATATCATTAGGGAAGTCTATAAAGAGAGATAGATGTGGATTTATTTATAATTCTGTATTGTGTTTTAAATACTCAATCACACCAACATTCAAGTAAACTTTGTCACAGTagcaaatataaaaaaggacTCCAGAGTAAATCATAACAGTGAAACAGGCCTCATCTCTGTAATCTGCAACCCACCTTTCTGAATGGAGCCTCCAGCATGGCCTCAACGTCAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67456 lncRNA downstream 5848 17064997 ~ 17065274 (-) True G50477
TU67455 lncRNA downstream 6376 17063818 ~ 17064746 (-) True G50476
TU67417 lncRNA downstream 126150 16944771 ~ 16944972 (-) True G50443
TU67335 lncRNA downstream 356374 16714061 ~ 16714748 (-) True G50389
TU67328 lncRNA downstream 391446 16666050 ~ 16679676 (-) True G50382
TU67483 lncRNA upstream 142 17074875 ~ 17079295 (-) False G50484
TU67485 lncRNA upstream 142 17074875 ~ 17076804 (-) False G50484
TU67482 lncRNA upstream 2208 17076941 ~ 17079295 (-) True G50484
TU67504 lncRNA upstream 32101 17106834 ~ 17114981 (-) True LOC120559328
TU67505 lncRNA upstream 33705 17108438 ~ 17115029 (-) False LOC120559328
XM_039800425.1 mRNA downstream 69813 17000401 ~ 17001309 (-) True LOC120559002
XM_039800861.1 mRNA downstream 98829 16962272 ~ 16972293 (-) False LOC120559259
XM_039800859.1 mRNA downstream 98835 16961498 ~ 16972287 (-) True LOC120559259
XM_039799620.1 mRNA upstream 5506 17080239 ~ 17098500 (-) False pabpc1l
XM_039799619.1 mRNA upstream 5506 17080239 ~ 17098174 (-) True pabpc1l
XM_039799621.1 mRNA upstream 5506 17080239 ~ 17098170 (-) False pabpc1l
XM_039799622.1 mRNA upstream 6140 17080873 ~ 17098178 (-) False pabpc1l
XM_039799623.1 mRNA upstream 23892 17098625 ~ 17104961 (-) True LOC120558578
TU67071 other downstream 787266 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2217305 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2217305 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2536517 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 2925900 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 613382 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 764811 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1805632 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2625040 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2626597 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU261038 False 2890 lncRNA 0.42 2 NC_048567.1 15787622 ~ 15790931 (-)
mexican tetra (Astyanax mexicanus) TU261038 False 1737 lncRNA 0.36 2 NC_035918.1 23631384 ~ 23633193 (+)