RNA id: TU67605


Basic Information

Item Value
RNA id TU67605
length 979
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G50553
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17152200 ~ 17153427 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaataatcagcagattgatCAATAATTAAAatctttagttgcagccctaccagCCATTCCTGGCCCAGCAAAATGctgaaaattaattaatttaaagtaGATAACACTATTGCAATGCACTTCCAAAAAAAGTCCGTTGAGAGGCTGCTCATCCTTATCCAGAACTCAGCTGCTAGACcgataacaaaaacaaaggagaGAATACATCACTCCAGTCTTGGCTACACTGCATTGGCTCCCTGTATCCTCTAGAATTGATTTAAAAGTCCTACTTGTATACAAAACTCTCAGCGTACTACATCACAGGTTCCCTTATGTTCCTTCACAAGCCTTTATATCACACGTCACAAACTcaatatcaatttaggttcacaataaattttggcccgcctattTGTGCGCCAAACTAAAAAGACGTGAAACTTTTCAAACTACACTCAagactcaaagcagaattttggcagatttgctgatggagaaattcccacagaacCATAGTTTGCACATTCATGTtttgaaacaggttgttgtgagtcagctttttgtagcctacttttaaaaatgtaatcattgttttgctaaaTTTTAAGATGGCTAAAGATTTTTATTGCTGacatttttagggctttatgtggaccaaacagGCTATAAGAGACCTGCAATACTAGTCAAAAAtatttcaatttttcaattgcataaaagcatgtcaataaacttaaaggggtgatagaatgcaaaaccgattttaccctgtcatagttgaataacgacagttcggtgggtaaataggacatacatataagctcaaaatcccattgacacccctttactatgaaaatttcatattttgaaactgccgctgaaaacgggtgaatcccaacaaagctggaagttgacgtcaacctcccaaaaaccggaacctttgtcagcccatgggtgtattaagagaacggtcacgccccaacatttacataggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67598 lncRNA downstream 511 17151317 ~ 17151938 (-) True G50549
TU67596 lncRNA downstream 2398 17148206 ~ 17150051 (-) True G50548
TU67505 lncRNA downstream 37420 17108438 ~ 17115029 (-) False LOC120559328
TU67504 lncRNA downstream 37468 17106834 ~ 17114981 (-) True LOC120559328
TU67624 lncRNA upstream 36650 17190077 ~ 17193635 (-) True G50567
TU67617 lncRNA upstream 50320 17203747 ~ 17205629 (-) True G50561
TU67638 lncRNA upstream 97223 17250650 ~ 17251274 (-) True G50574
TU67718 lncRNA upstream 316780 17470207 ~ 17470675 (-) True G50647
TU67797 lncRNA upstream 529621 17683048 ~ 17683519 (-) True G50709
XM_039800940.1 mRNA downstream 10505 17130282 ~ 17141944 (-) True slmapb
XM_039800941.1 mRNA downstream 10506 17130282 ~ 17141943 (-) False slmapb
XM_039800975.1 mRNA downstream 28162 17119666 ~ 17124287 (-) True abhd6b
XM_039800976.1 mRNA downstream 32887 17116150 ~ 17119562 (-) True kctd6b
XM_039800977.1 mRNA downstream 32888 17116150 ~ 17119561 (-) False kctd6b
XM_039801877.1 mRNA upstream 61 17153488 ~ 17157550 (-) True si:ch73-233m11.2
XM_039801477.1 mRNA upstream 5377 17158804 ~ 17162048 (-) True LOC120559621
XM_039799276.1 mRNA upstream 55789 17209216 ~ 17240738 (-) False LOC120558336
XM_039799275.1 mRNA upstream 55789 17209216 ~ 17240495 (-) False LOC120558336
XM_039799279.1 mRNA upstream 55789 17209216 ~ 17238113 (-) False LOC120558336
TU67071 other downstream 868593 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2298632 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2298632 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2617844 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3007227 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 534688 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 686117 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1726938 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2546346 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2547903 19701330 ~ 19701451 (-) True LOC120559928