RNA id: TU67617


Basic Information

Item Value
RNA id TU67617
length 1748
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G50561
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17203747 ~ 17205629 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tCTATATAGAAATGATGCAATGTGCATCTCAAAAGGGGACAACTGTGAGACAAAAATACTTTGGTACACTTGAATCTCCAAGATTTTAACAGACAAAGCAGCACGGTATTGTTGTGGCTCCTGCACATGGTTTAGATTTTGTATCCAACTGTGCAATTTGATGGATTATTGAACATTATTCTAAATTTGATGGTGCATTTTAAGTGAGAATGCCATTGCTTCAGTGAATATTGCACACTGAAAAATGTAATCCTGGCTCGCAATGTAATCAatatttagaaaacaatttttttttttttaagttttcagtCAAATTAATTTATCAGTGATGGTGTTCATatgatgtacagtataaaattgTTACAAAAGGCATATGTGATTTACAAACAATTCAAATTCTACAATACAAATGCCTACACCAAACATTAAAAACTAGAATCCAGTGGTAGTTCTGCAGAGAATGTCTGCTTCTGTAATGAGCACAATGGAGAAAGTTGTCAGGATGTTtagaaaaaagtaatttttttagtttaaagTGATGTTCTCACAGATCCTTCTAAAGATATTTGATGTCGTATTTCTATTCTGTCATCATCTTAGAAAGAAGTCAACtagatactgtatatcaaaGTTTACAATATCAAAAAAGTTAGAAgctaaaaatatttcttcctgAAATGTGTTGCAAATGCAACTCCAAATACCttgcaacaataaaaacaaatactacAATAAAGGTGAAACGACATATAAAGTGCAAAAAgaggtttaaataaatgcactGGGACTGACTATAGTAGTCACACAGGCTGTGTACAAATACTATAAAAATGCCACTTCCCTTTTCTCCTTATTTCCTCTTCCTAAgctgttctttttgttttgtttgtttttatatatctctatctctatctcattctgtttttgagGATGGATGGATCTTCTTATGAATGCATTTCTCACAGTATTTGGCCAAGGCCTTGTTCAGCTTGTAATTTAAAGGACGTAAAGCAAGATTAACTCTATACACTGCATATTGCCACTTAAAATGTTGTGTGTACTCTGAGAGACGTGGCTCACTTCCGCTGCTAGCGAGGTACATTCATTTTAACTGGAGGgatgaacaacaacaacaaaattagAGGTTAGCTTGAGCAACTAGACTGCCGCAATCATGTGAGGATGTTTAGTTTTCTTATATGTGGTTAATTACTTGTTAGTTTACTGAATTTATGTGAAGTGAGAATATAATCTGTCCTATTACACCAAAAAAGCAAATTTCTCATCTTGTCTCTGGAATCAACAGAAATGTAGTAAACAATGAATATTTTCTATCTCAAAATATTGCCTAAACTGAGATCAGTGCCAActacagcaacaacaaatgtAACATCAATGATATCAatatagtaaaaaataaaataaaaattacaagAGAATAAAACATTACAACAATAATATATAACCCTCTTCATATAAATCAAACCAGAGTATCTCTAATGTGAATATAATGGACGATGCAAACCTACCATTATCAAAGTTAGCAAACATGATAATAACACAGAAAGCACATTAATCTTTTTCCTCTCACAGAGAGTGCTCACATCGTTGTTTCTACAATGGTGTGGGTGGGCTTGATCAAGCCATTGTTCCCGTTTGGGTCCAGGGGCTGTGTCAACTCGCTGCCCTTCAAGTTGTACTCTTTTGGGCGAGAGCTCACGCCTGACTTCGCTGGGGCTGCCACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67624 lncRNA downstream 10112 17190077 ~ 17193635 (-) True G50567
TU67603 lncRNA downstream 50320 17152200 ~ 17153427 (-) True G50553
TU67605 lncRNA downstream 50320 17152449 ~ 17153427 (-) False G50553
TU67604 lncRNA downstream 50353 17152449 ~ 17153394 (-) False G50553
TU67598 lncRNA downstream 51809 17151317 ~ 17151938 (-) True G50549
TU67638 lncRNA upstream 45021 17250650 ~ 17251274 (-) True G50574
TU67718 lncRNA upstream 264578 17470207 ~ 17470675 (-) True G50647
TU67797 lncRNA upstream 477419 17683048 ~ 17683519 (-) True G50709
TU67884 lncRNA upstream 577059 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 769126 17974755 ~ 17991671 (-) False samd10b
XM_039801477.1 mRNA downstream 41699 17158804 ~ 17162048 (-) True LOC120559621
XM_039801877.1 mRNA downstream 46197 17153488 ~ 17157550 (-) True si:ch73-233m11.2
XM_039800940.1 mRNA downstream 61803 17130282 ~ 17141944 (-) True slmapb
XM_039800941.1 mRNA downstream 61804 17130282 ~ 17141943 (-) False slmapb
XM_039800975.1 mRNA downstream 79460 17119666 ~ 17124287 (-) True abhd6b
XM_039799276.1 mRNA upstream 3587 17209216 ~ 17240738 (-) False LOC120558336
XM_039799275.1 mRNA upstream 3587 17209216 ~ 17240495 (-) False LOC120558336
XM_039799279.1 mRNA upstream 3587 17209216 ~ 17238113 (-) False LOC120558336
XM_039799278.1 mRNA upstream 3587 17209216 ~ 17238113 (-) False LOC120558336
XM_039799277.1 mRNA upstream 3587 17209216 ~ 17238113 (-) True LOC120558336
TU67071 other downstream 919891 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2349930 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2349930 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2669142 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3058525 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 482486 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 633915 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1674736 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2494144 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2495701 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile