RNA id: TU67884


Basic Information

Item Value
RNA id TU67884
length 3629
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G50779
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17782688 ~ 17786360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcactttaatattttatgaaggttaatataaaacattacaatcttttgcatatctgcactGTCAcactatattttattatattcatttttttttaattaaaccctGTGCTTTAAGAACATACAATATTGGCTACAGCTGTTACAGCAGTATTGGCCCATAATTATATCTGAAGACAATTAACAAACAGCATCTGTATCTGCATGGAAAGCATGAAACATTTTGCATCCACAAAGTACAATGTGTCCGTGAtaaccatctttttttttcaacaaatatactgtgtactgtatgttacatTGGAACAACATCAGAACAGCAACAGAgtattttacacatttacatcatcatactgtatttgtttgtgcAATGAACATCTGTCTCAATCAATGTATACTGTTTTAACAGTGTCCAACAAAGTATATCAGATCAGTGCTTTTTCTCAGGATAAAGAAAATGTGACACATAAAGTGACAGCCAGAGAAAAAGAATTAAGTGTGATAGCGATTTCCAGCCAGCATTGTCTAAGGGAAGCCGCAACAGAGCTTGTTAAGCAACTCAGCTGTTAGCCATTTCTCATATCAGACAGTAGTTGAGCCGTTGGTGCATTGTTGATATCAGACTGCCTCtgcacccccctctctctctctctctctctctctctctctctctctctctctctcatatcactccctctctctctcatatcaCTCCCTGAGTCTCTCAGAACTGGACATCAAAGGCCCTCCCACTgcacacagaggaagagaggtgaagcagagaaaagagaggTCAGTGACAGCTGGGAGTATATGCAAGGGCTGACCAAGTGGAAGCAAAATGTGCCTCATCCACTAACCTGGAAACACACATGGCTTATTGgcatgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcaaaaACGTCAGAAGTGGGATGGTCCTTTGGGTCTGTGTCAATTTGCAGTGATCCTCATCCAGGTTTATACAGTTTTCTTTTATACTCTCTTTTCCTTCCACACCTCTATCGCTCTTCCTTGCTCCCCCAGAGCGGAGGATAAACAACCTCTAAACTCCCAATGGCttctctctatctttctatTTCTCTACCCTCCTCCTACTTTAAGTTGctgctttggaaaaaaaactgaaactgcTTTGCATCACATGGCAAAAAAAGATTAACAAACAAGAGATCAATTAAGTACCACAATATTTGTTTTCATCTCCATATATCAAagcatgcactttttttttgatCAAGCAGGAAAAATTTGCACCAACAACATAAACGTACTGTTTTCATGGCAGTGGCATGAGCTATTCAACCAATGGTATTATCAGTAGgtaagaaaaaataaacagtgCATTAAATACAGAgtgcatttgtttttacataCTTTCTGACACAGTAGCATTTATAAGTTACTAACCTTTCTAAACCCGTTTTTTCTTTGCATGGTTGTCTCACAGTGAGATCATTCTAATGCTTCCTTAATTTCTGTGAGCAGTTTGTATCCCTTTTCACCTCTTATCTTTATGTACATTTATTAAGcctttaatgttttgttttcttcctcaGTTCTTTCTGTTCCCCAAAGCTACATGggaaagacatttttttaaactgagaaGAAGAGGCTGGAGACAAGGGTGGGTAGAGTGAGGGGCAACCTTCCAAAGGACACTTGCTGGTAATCTTTATGCCCAGCTCTTTATTTTCCTTGGAGTCTAAGCCCTCTGTTGCTATTTCAACCACCAGACTTGAGTCGAGCTATGGGGAGCTCTGGCTTTGACTTACGACTACAGAGCAAATCAGAACTGTACTCGGAAACACCCTTTACAGAATGTTAATGCACAATTAAGCCAAACACCCTTGTAGCTGTGCCCTGCAAAATTATAATAGTCATTAAATCAGATGTTTACAGTGCCCAAAGGACATGGAATATTAACTACACAGGGTGAAGCATCCTGTATTATTTTGGACACTCTTTCGTTtccttattttaaaaaaaaatattcttctCTCATTTTTCCCAGTAATACAGTAAAGGTTTTGCATTGTGAAATCTGTCACCCATATCACGCTGGGGAAATTCTTGCACAACCCACTAAATGCCCTTGACCTGATCGCTTTACCCCGCATGGCTCTGCCAAGtatgtgtgtagctgtgtgggGGTGTTTTGCCTCTGTTGCCTCGGGCTACAGATGTCTGTCAAATCGGAGCGTGGATTCTTGATTGAAAGTTACAGAAAACTCACTTTTTTATAGTTATAATGATGGCTGTTATTGATAGAGAACTGCTAATACGTTAAGGGCACATTTATGATAGTAATTTGTGAAATGGGGACTATAGCCTTCACTTACCTCTGTGTTTAAGCAGGCCTATAAATGTTAGGCCTATGTTTGAACAAAGCACCACAATGCTGTCTGCCAGGCAACAGGCCACACAGACAACCGGTTTCAGATGTTTGCTGAGGGAGAGCTAAGCACTGCAAATCTCTGTGACATCCATCTGCTTATATTACATAAGTCCCCCCAAGATgaggcatatgtgtgtgtgtgtgtgtatgggtgacAACAACTAACAGTGTGCCTCATACTCCCAATATACCTACAATATACCTTGCTACTTCTGTCTattctcatgtgtgtgtgtttgcacaatgcatgcactttttttaatgtatattaaagtGTGTTCTTCTCAGGATGTGAGTTACACCACATACTCTTTAAAGAGTACAGTGttcatataaaaataaaatattatggAAAATGATGCACAAACAGGTGAGTATGGTCAGTGACACAGTAGGTTGAAGACATAtattcttgttttcttttctttctttttttttgttaaaacataTTTGGTCCATATTGGGGCTGGACTAGGCTTAGGCTGGTTCTGAAGTACAGACCAATCAAGGGAAGTCTGAACCTGGATTAAGACCCTGTTtatacctgatgtcatcacaaAATGGATCCTCATGTTGTTTGTCTATAGAGGGCCTTGTATCTATGTACAGCAACCTGTTGGCTGGTGAACAGGAGGGTCCCTTTCATGACTCTGTACCAGTGGGTTCTGGGCCCTTTCTGCCTGTCAGCCAGCTACAGGCCGGTGACGTACATCTCCATCCCATCATTGAAGGTGAAGATGGTAGTGGTGCTGGAGCTGTTGCCCCCTTGTTTCACATCGCTGATGGTCTCATAGAAGTTTTCCCCACCAGGCAGTCCTCTAGTAGGCAGGGCGGTGGGTCCTGAGCTCTGAGgtgccgctggtgctgcctgctgctgcgGCATCTGCTTCTTTCTCTTCAGAGTGGCAGAACCCCCAGCTGTGCTGTTATTGGTTGCCGCCTGCTCCCGTTTCCGGTGGGTGTCGATAGTAGCGTACGCAGGGTCAGACTCGGTCATTGCACATGTGGGCCAGGACCTGTCTCCTACCGGCTCATAGCCGGGCTCCTCCTGGGAACGTGCCTGGCCCTGAACTCCTCGACCTCTGCCCCGGGAACCTCCACCAAAGGAACGTGGGAGGGTCTTTGATCCGTTGTTTTCCATGGGAGGTTTCTTCTTCTGGGTTTTACACACAATAGAGTAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67797 lncRNA downstream 99169 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 312013 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 531414 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 577059 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 589053 17190077 ~ 17193635 (-) True G50567
TU67914 lncRNA upstream 188395 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 188395 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 217314 18003674 ~ 18024302 (-) False samd10b
TU67928 lncRNA upstream 254049 18040409 ~ 18041404 (-) True G50803
TU67935 lncRNA upstream 267659 18054019 ~ 18057349 (-) True G50808
XM_039799340.1 mRNA downstream 45860 17689955 ~ 17736828 (-) False nkain4
XM_039799339.1 mRNA downstream 45862 17689955 ~ 17736826 (-) True nkain4
XM_039799336.1 mRNA downstream 100331 17671661 ~ 17682357 (-) False LOC120558364
XM_039799335.1 mRNA downstream 100331 17671661 ~ 17682357 (-) False LOC120558364
XM_039799334.1 mRNA downstream 100331 17671661 ~ 17682357 (-) True LOC120558364
XM_039800023.1 mRNA upstream 48720 17835080 ~ 17886333 (-) False zbtb46
XM_039800019.1 mRNA upstream 50613 17836973 ~ 17895082 (-) False zbtb46
XM_039800020.1 mRNA upstream 50613 17836973 ~ 17895082 (-) True zbtb46
XM_039800018.1 mRNA upstream 50613 17836973 ~ 17895081 (-) False zbtb46
XM_039800017.1 mRNA upstream 50613 17836973 ~ 17893573 (-) False zbtb46
TU67800 other downstream 92928 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1498832 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2928871 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2928871 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 3248083 14532124 ~ 14534605 (-) True G49766
XR_005639183.1 other upstream 53184 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1094005 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1913413 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1914970 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1920319 19706679 ~ 19706800 (-) True LOC120559930

Expression Profile