RNA id: TU67916


Basic Information

Item Value
RNA id TU67916
length 2369
lncRNA type sense_over
GC content 0.44
exon number 5
gene id samd10b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17974293 ~ 18101572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggggggggggggggggggagagagagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagggatctaGTCTGTATCCAGTAACAGCTGGCGTAATGACCTTTTGTCTCCCGGCGGTCAGGTACGGAGAGGGGGGCGGAGATTCAGAAGGAGCCGCTTCACATCGGACTTGTCCCGGCGTCCCGCACAACAAATGGCCGTGAACCGACAGAGATGAGACTGTGATAATCCaggtttctcttttttctgtgtACGACTACAGTGCAAGCCGTCTCCATGCTCACATAGTAGGTTAGAGAGGGCAAGAAGCGCTCTTTATCCTTTACGTTCAGAACATTTTATCCATCCGGCAGAAGAATGGGAGAGTCCTGTTGACACCACGGAGAGATACACGCTGAGACCGACTATGGCTGTGGACGTTGCATCCGGGCGAAGCCTTCACTGTGTATCACACCAGTCCTACCCTGTCCAGTCTTTCCAAGCCTGTGGTGCTGTGGACTCAGCAGGATGTCTGCAAGTGGCTTAAGAAACACTGTCCTCACAACTACCTGACCTATGTAGAGGCCTTCTCCCATCACGCCATCACAGGACGGGCGTTACTGCGTTTAAATGGGGAGAAGCTAGAGAGGATGGGAATCATCCAGGAGACGTTGAGGCAGGAGGTCCTTCAACAAGTCCTCCAGCTGCAAGTCAGAGAAGAGGTCCGCAACCTGCAGCTCCTTAGTAGAACCTCCTTTGGAAACTTCTCTTAGCTCACCCCTGGATCCATTTGGCAGCCCTTTCCCTCATCCCCTGTCACAATACATCTCTAGGAGCCATTGAAGAGCTGCTGTCTTCAGATATGTGAGCGAATGGTGAAAGGGGAGAGGACAAGCCTATAGACTACATGCCAACCGGTCTGGAGGATTCTCATTCAACACGGCCAATCTGGTTTACAGAcactgagacagagagacaaagccCGGCTCAAGGCAGGGGTACCCACTGTAACATAGTGATAAGATGTAAGATTCACAGCCCTAGTGATGATGTAGGCCTGTCACTGGTATATGCTTGATCGCAGCAAATCTCCTTTTGGTTTCCTGGTGTCATTTTGATCAGACTGATTTTAATGCTTTACATGTGCACAACCAGTATTTATGGATTTTCCTCTCTATTCTGGTTAAGGTGAATGAATAACTCTCTGAACCTTTGAGCCCAGTAACGCTAAAACCATGTGGAGGACGGTTTGTATCGTAGTTTAAACATAGATTTACGTACATGCAGCGCTACCATTCGGCCACTGGATCGAAAGTTAAGGAAACCTCCATTCAAGCTCCATGTCCCTTTTAAGCTATGACAGGTGCCTGTTTACAAGGAATTAGCTGGTCTTGACTAATGCCAATACAATTCTTATCAATTCCTCACCAACATGTCACACTCACGTTTTCCTCTCAGGACTTTAGTTTTGGATAGTTTTGTAGGTTTGGAGGTCATCAAAAACACTTTAAGCCGAATGTCATTCCAACAATCAGTCTTTTTCTATTGATCTGCAGTATTTGAGccagaaattatatatatagatatatataaagtatgAGCGTTGTAGAATATAATACAGTTTAAATCTACGTATACTGTTCCTTAGTCTTTTATTAATGCAATGGATCCTTAGGACACAGTGTTAATGTGATAGTCACTGACTGTCTATGCTTGATAAAGCAATAATTTTAATGATTAAAGGTGAAGAGGAGGAGCACTGTATGGGAGAAATTTGAGTTGCAAGAATGAGGGATGTCTGCTGAGGGAAATGTATGTTTTGCCTGTTACAGCAGCATCATTTGCCAGCCTCATAGCTTCTGTCCTTTGTGTgtgctactgtatactgtatgtcatcTCTCGCACACAATTTCTTTCCCTGGTGTGACACTGTGATTTAAAATGCTCAGAAATCAAAAATACTATGAAAGCTACCCAGATACAAGATTCCCAGCGCGACTGAAGCAAGCACCTTTGATTTAACTCTAGACAGAAGCAGACAGCTGTGTATGACGAAGATGTTTAAGtcacatacataaataatttcaatacttaaataaacaaaacctcCCCTTCTAGCATCCCTCCATCCGTCCTTTGACGAGGAGTCTTTGGGTAATGTAAGTaattgactgttaaaaagtagAAAATACACTATTATTTTTGGATAACCggatgtactgtaaatatgaaCACTTTTGGTTTCCTTTGTCAGATGACTGATGAGctgtttaaaatgcaaaaaaggaaaaatatgtaTCTGCTTTACAGATATGAAGACATATGGTATTGAACATGATGAAAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67884 lncRNA downstream 188395 17782688 ~ 17786360 (-) True G50779
TU67797 lncRNA downstream 291236 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 504080 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 723481 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 769126 17203747 ~ 17205629 (-) True G50561
TU67983 lncRNA upstream 138287 18239859 ~ 18240070 (-) True G50848
TU68002 lncRNA upstream 182604 18284176 ~ 18284510 (-) True G50867
TU68004 lncRNA upstream 188310 18289882 ~ 18290636 (-) True G50869
TU68007 lncRNA upstream 197404 18298976 ~ 18299354 (-) True G50872
TU68012 lncRNA upstream 202743 18304315 ~ 18304637 (-) True G50877
XM_039800357.1 mRNA downstream 3842 17936494 ~ 17970913 (-) True znf512b
XM_039800319.1 mRNA downstream 41654 17915256 ~ 17933101 (-) False uckl1b
XM_039800761.1 mRNA upstream 58602 18160174 ~ 18190215 (-) False b4galt5
XM_039800760.1 mRNA upstream 58602 18160174 ~ 18190215 (-) True b4galt5
XM_039799288.1 mRNA upstream 233829 18335401 ~ 18340591 (-) False spata2
XM_039799289.1 mRNA upstream 233829 18335401 ~ 18340457 (-) True spata2
XM_039799494.1 mRNA upstream 502072 18603644 ~ 18611600 (-) True dhx35
XR_005639183.1 other downstream 88422 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 284995 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1690899 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3120938 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 778793 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1598201 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1599758 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1605107 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2219195 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile