RNA id: XM_039800428.1


Basic Information

Item Value
RNA id XM_039800428.1
length 2702
RNA type mRNA
GC content 0.42
exon number 6
gene id samd10b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17974293 ~ 18101572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCAGACTCCACTTGGTTTTCTCCAGCAAGCTTAACCTCTGCACATGGAGTATAAGGAGCTGATTTCTCTATGCTCAGCAGACAGAGTGTGGTGGATCCCTGTCGGACTGCCATGCAGGCAATCTCTGAAGCGGCGTCCAGCTTCAGTTTTTGCCGTGCCTCCCTGGAGCACACGGTGTCTGCTGAGGAGCTGAGCTACCAGCTGCCGCCACATGACACAACAGCCTCCTTCCTGGCTCCTACTGCTCACACGAAAGAGGGCAGAAAGTCCAGTGGAGGTCATTTGTTTAGTGTTCCCACTGCCTTCAAGAAAGTTTGCTACTGTGAGGCTTTGCATCCGGGCGAAGCCTTCACTGTGTATCACACCAGTCCTACCCTGTCCAGTCTTTCCAAGCCTGTGGTGCTGTGGACTCAGCAGGATGTCTGCAAGTGGCTTAAGAAACACTGTCCTCACAACTACCTGACCTATGTAGAGGCCTTCTCCCATCACGCCATCACAGGACGGGCGTTACTGCGTTTAAATGGGGAGAAGCTAGAGAGGATGGGAATCATCCAGGAGACGTTGAGGCAGGAGGTCCTTCAACAAGTCCTCCAGCTGCAAGTCAGAGAAGAGGTCCGCAACCTGCAGCTCCTTAGTAGAACCTCCTTTGGAAACTTCTCTTAGCTCACCCCTGGATCCATTTGGCAGCCCTTTCCCTCATCCCCTGTCACAATACATCTCTAGGAGCCATTGAAGAGCTGCTGTCTTCAGATATGTGAGCGAATGGTGAAAGGGGAGAGGACAAGCCTATAGACTACATGCCAACCGGTCTGGAGGATTCTCATTCAACACGGCCAATCTGGTTTACAGAcactgagacagagagacaaagccCGGCTCAAGGCAGGGGTACCCACTGTAACATAGTGATAAGATGTAAGATTCACAGCCCTAGTGATGATGTAGGCCTGTCACTGGTATATGCTTGATCGCAGCAAATCTCCTTTTGGTTTCCTGGTGTCATTTTGATCAGACTGATTTTAATGCTTTACATGTGCACAACCAGTATTTATGGATTTTCCTCTCTATTCTGGTTAAGGTGAATGAATAACTCTCTGAACCTTTGAGCCCAGTAACGCTAAAACCATGTGGAGGACGGTTTGTATCGTAGTTTAAACATAGATTTACGTACATGCAGCGCTACCATTCGGCCACTGGATCGAAAGTTAAGGAAACCTCCATTCAAGCTCCATGTCCCTTTTAAGCTATGACAGGTGCCTGTTTACAAGGAATTAGCTGGTCTTGACTAATGCCAATACAATTCTTATCAATTCCTCACCAACATGTCACACTCACGTTTTCCTCTCAGGACTTTAGTTTTGGATAGTTTTGTAGGTTTGGAGGTCATCAAAAACACTTTAAGCCGAATGTCATTCCAACAATCAGTCTTTTTCTATTGATCTGCAGTATTTGAGccagaaattatatatatagatatatataaagtatgAGCGTTGTAGAATATAATACAGTTTAAATCTACGTATACTGTTCCTTAGTCTTTTATTAATGCAATGGATCCTTAGGACACAGTGTTAATGTGATAGTCACTGACTGTCTATGCTTGATAAAGCAATAATTTTAATGATTAAAGGTGAAGAGGAGGAGCACTGTATGGGAGAAATTTGAGTTGCAAGAATGAGGGATGTCTGCTGAGGGAAATGTATGTTTTGCCTGTTACAGCAGCATCATTTGCCAGCCTCATAGCTTCTGTCCTTTGTGTgtgctactgtatactgtatgtcatcTCTCGCACACAATTTCTTTCCCTGGTGTGACACTGTGATTTAAAATGCTCAGAAATCAAAAATACTATGAAAGCTACCCAGATACAAGATTCCCAGCGCGACTGAAGCAAGCACCTTTGATTTAACTCTAGACAGAAGCAGACAGCTGTGTATGACGAAGATGTTTAAGtcacatacataaataatttcaatacttaaataaacaaaacctcCCCTTCTAGCATCCCTCCATCCGTCCTTTGACGAGGAGTCTTTGGGTAATGTAAGTaattgactgttaaaaagtagAAAATACACTATTATTTTTGGATAACCggatgtactgtaaatatgaaCACTTTTGGTTTCCTTTGTCAGATGACTGATGAGctgtttaaaatgcaaaaaaggaaaaatatgtaTCTGCTTTACAGATATGAAGACATATGGTATTGAACATGATGAAAGCTGTCTTTTTAGAATAAACTAATTGAGATTCAGTGTTGGTCTTGTTTTCACATtgtattaatataattatttttaattgtttttattcttgATTTATTAGTATATAGCAATGTCAGCAGACACTGAAACACTGGGACAAGTAGCATTGAAGCATCAAAATATATACCCTCACCAGATATAATAAATTGACATTAATCTTTGCTCAACTTAAGGCAGGTATcaaaaaccaaaagtcaaccctCATTCATCTTGTCTCGAGATATTGTAGAAGAGGTGGGCAAGATCTCTCCCATATGGAGACATTTCAAGTTGTTAAAACAACATGTTTGTTATGTATGACAGATATCATTTCTTGTAATCATTGCTGGAAACAAGATGGAATTGGTGTCTTCCAGTCTTTGAGGCAATTCTTTTGGCAGTGTTCCCATCATCAAAACTGATTGTATATAAAAGAGAAGTGAATGTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67884 lncRNA downstream 187933 17782688 ~ 17786360 (-) True G50779
TU67797 lncRNA downstream 290774 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 503618 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 723019 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 768664 17203747 ~ 17205629 (-) True G50561
TU67928 lncRNA upstream 29867 18040409 ~ 18041404 (-) True G50803
TU67935 lncRNA upstream 43477 18054019 ~ 18057349 (-) True G50808
TU67983 lncRNA upstream 229317 18239859 ~ 18240070 (-) True G50848
TU68002 lncRNA upstream 273634 18284176 ~ 18284510 (-) True G50867
TU68004 lncRNA upstream 279340 18289882 ~ 18290636 (-) True G50869
XM_039800357.1 mRNA downstream 3380 17936494 ~ 17970913 (-) True znf512b
XM_039800321.1 mRNA downstream 38622 17915256 ~ 17935671 (-) False uckl1b
XM_039800318.1 mRNA downstream 41191 17915256 ~ 17933102 (-) True uckl1b
XM_039800319.1 mRNA downstream 41192 17915256 ~ 17933101 (-) False uckl1b
XM_039800323.1 mRNA downstream 45123 17915256 ~ 17929170 (-) False uckl1b
XM_039800761.1 mRNA upstream 149632 18160174 ~ 18190215 (-) False b4galt5
XM_039800760.1 mRNA upstream 149632 18160174 ~ 18190215 (-) True b4galt5
XM_039799288.1 mRNA upstream 324859 18335401 ~ 18340591 (-) False spata2
XM_039799289.1 mRNA upstream 324859 18335401 ~ 18340457 (-) True spata2
XM_039799494.1 mRNA upstream 593102 18603644 ~ 18611600 (-) True dhx35
XR_005639183.1 other downstream 87960 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 284533 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1690437 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3120476 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 869823 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1689231 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1690788 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1696137 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 2310225 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile