RNA id: TU68237


Basic Information

Item Value
RNA id TU68237
length 539
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G51064
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18712675 ~ 18713213 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAACTCTTTAGCTGTTAAataaatgcagtggagtaaTAAGTAGACCTACTATATGTTAAGTAAAGtagaatattaaaaaaacatggagtgaATAAATGGTAGTACTCAGTAAAGTGCAAGTACCTAACAATTGTACTTATGTACACGTATTTTGTTAGATTCACTGTCCACCTTGTAGATGACTGTGTAAAAGTAGGCGGAAGTTTACAGTATGCAAAAAGGGAAGAGGTGAACAGACGGGTGTGGTAAGTGTAAATAAAGCCTACTGTGTGGAATGAATATGGACGGGGTGATATCATGCACAACACGGACTTATTGTGGCTTGAAAGAGGAATACATTAAAAGTAAGCAAACTATGAGAaaagttgattgattgattgattgattgattgattgattagtgATTAGGTGTAAACAAGCAAATTATAGAATAAGAATAAGATCTATTTTTGCAGCAGAGTGCTCCAACATTGTGTTGTGCTGAGACATCATGTTGTTGAGTTCCCCTGTAGTGTTACTGCCTTTCTGTGGATTGAAG

Function

GO:

id name namespace
GO:0022900 electron transport chain biological_process
GO:0070469 respirasome cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68142 lncRNA downstream 77440 18634465 ~ 18635235 (-) True G50991
TU68086 lncRNA downstream 207659 18504469 ~ 18505016 (-) True G50945
TU68082 lncRNA downstream 236963 18474909 ~ 18475712 (-) True G50941
TU68072 lncRNA downstream 344305 18368027 ~ 18368370 (-) True G50932
TU68052 lncRNA downstream 393070 18319313 ~ 18319605 (-) True G50915
TU68241 lncRNA upstream 25270 18738483 ~ 18740343 (-) True G51068
TU68243 lncRNA upstream 44829 18758042 ~ 18758501 (-) True G51069
TU68268 lncRNA upstream 209650 18922863 ~ 18928835 (-) True G51088
TU68282 lncRNA upstream 235620 18948833 ~ 18950436 (-) False kcnd3
TU68313 lncRNA upstream 514108 19227321 ~ 19227905 (-) True G51122
XM_039799503.1 mRNA downstream 799 18700325 ~ 18711876 (-) True LOC120558485
XM_039799504.1 mRNA downstream 799 18702140 ~ 18711876 (-) False LOC120558485
XM_039799508.1 mRNA downstream 12664 18686773 ~ 18700011 (-) True ncoa6
XM_039799502.1 mRNA downstream 26253 18670674 ~ 18686422 (-) True top1
XM_039799500.1 mRNA downstream 43926 18636575 ~ 18668749 (-) False plcg1
XM_039799506.1 mRNA upstream 413 18713626 ~ 18723209 (-) False LOC120558486
XM_039799505.1 mRNA upstream 413 18713626 ~ 18723209 (-) True LOC120558486
XM_039799507.1 mRNA upstream 413 18713626 ~ 18723207 (-) False LOC120558486
XM_039800724.1 mRNA upstream 62537 18775750 ~ 18787283 (-) True samhd1
XM_039801584.1 mRNA upstream 88734 18801947 ~ 18817830 (-) True LOC120559673
XR_005639183.1 other downstream 826342 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1022915 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2428819 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3858858 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 167152 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 986560 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 988117 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 993466 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1607554 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile