RNA id: TU68241


Basic Information

Item Value
RNA id TU68241
length 1519
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G51068
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18738483 ~ 18740343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttagacaaagcttttatttacaTGTGGCAGAAAAAGGCACAGTATTCCCATTTGAAATGCATGTTCaagttcataaaaaaaaaaaaaaaaatgttggtcaAAACATTCCCCTAAACAGgtctaaatatattttatttagacTGTAAAATGACAATATTGGTAAAGCTAAGATGTGTTTTGGTCAAGTTTAAGTGATCCTTCACATCCCATAACAGTGTGTGGAAAGTGTTTTTGGCTTGAGGAGGGGCGAGCAGGAGTCACCTGTCACCGAGGTTACAGCTAACACGTCTCTCAGCGCCCTGCCTCCACAGTACACCATACACAGACAGCtgtctcaacacacacacacacttgctcatGTATGTATAGTATGGTGAGGAATGACatcctcacatacacacacaaacacactccagcAGCTGCAACATGGCCAGAGTCCCGGACCGGCCGGCACCGATGGTGTTTCCTGGGAATTAACTGGATGTCCAGCTGCCCTCaaatcacacatacatacacacagtcacCAGGACGCAGCAAATATGTGAAGGAGATACCAATATGACCTCATAGATCTATACAGAATCCTTGAAAAGGCACTTAagaatcaatttataaaaagCAACAGAACTCCAGTTTTCTGTCCCATCATGGCTTTGAAGTCTATTGTCCTCTGTGTATATTTGCTCTAATCAGGAGGCAATGAATCAGCTTCAACTAGCTCATGAGAACAGTTCAGGGAATGTGAGTCAATGAGGCAGGGCAGCATCCAGAggcggtgtgtttgtgcagcaGGGACATGCGACTGAAGGTCCGCGAGCAGGAGCCACACTGGTACTTCTTCACCTCAGAGTGGGTCTGCAGGTGGGCGCGCAGGTTGGAGCGATCAGCAAAGGCCCGGTTACAGTGTTGACAAGCGAAGGGGCGCTCACCTGGTgtgtgcgaatGTGTCCTCTGAGCAGCCATGGTCGGGAGAAGGCCTTGCCGCAGGTGGGGCAAACACAGGGCAATGTGTGTGAGCGAATGTGCATTTTCAGTGCCCCCAGGCTGGTGTACTCCTTGGGGCAGTGTTTGCAGTGGAAGGCTGGACGTGCAGAGACTTCAGTGGGCAGAGAAGGAGTCTGTTGCTGTGGCGCACAGTTGGACATCTGATGATGGGACAGTGCCGAGAGGCTGGTGTAACTTTTACTGCAGTGCAGACAGTGGTAGATGTGTTGCTGGATGATGTCCGGGCTGGGAGGATCTGAAGACCGTCcgccatcctcctcttcctcgctGCTGCTGGAGGGAGAGCTGCTGAGGTCCAGAGGGCCAAGCGGAGAAGgggacagagacacaggggAGAGAGGTGCAGGCATGGTGTCCATGCTGCTGAAGAAGGAGTTGGTGGGATAGCAGGTCAGGGCCAAACTGTTGTTCTGCGTTGGGAGTTCAGCCCGGGGAAAGCTTTCTGGGACAAAAGctggcaacacagagaaaaGGAAGTCAGGTGGATTGTAATGGACAGATAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68237 lncRNA downstream 25270 18712675 ~ 18713213 (-) True G51064
TU68142 lncRNA downstream 103248 18634465 ~ 18635235 (-) True G50991
TU68086 lncRNA downstream 233467 18504469 ~ 18505016 (-) True G50945
TU68082 lncRNA downstream 262771 18474909 ~ 18475712 (-) True G50941
TU68072 lncRNA downstream 370113 18368027 ~ 18368370 (-) True G50932
TU68243 lncRNA upstream 17699 18758042 ~ 18758501 (-) True G51069
TU68268 lncRNA upstream 182520 18922863 ~ 18928835 (-) True G51088
TU68282 lncRNA upstream 208490 18948833 ~ 18950436 (-) False kcnd3
TU68313 lncRNA upstream 486978 19227321 ~ 19227905 (-) True G51122
TU68349 lncRNA upstream 587309 19327652 ~ 19415195 (-) True G51147
XM_039799506.1 mRNA downstream 15274 18713626 ~ 18723209 (-) False LOC120558486
XM_039799505.1 mRNA downstream 15274 18713626 ~ 18723209 (-) True LOC120558486
XM_039799507.1 mRNA downstream 15276 18713626 ~ 18723207 (-) False LOC120558486
XM_039799503.1 mRNA downstream 26607 18700325 ~ 18711876 (-) True LOC120558485
XM_039799504.1 mRNA downstream 26607 18702140 ~ 18711876 (-) False LOC120558485
XM_039800724.1 mRNA upstream 35407 18775750 ~ 18787283 (-) True samhd1
XM_039801584.1 mRNA upstream 61604 18801947 ~ 18817830 (-) True LOC120559673
XM_039801585.1 mRNA upstream 78499 18818842 ~ 18826772 (-) True LOC120559674
XM_039800560.1 mRNA upstream 115597 18855940 ~ 18873169 (-) True si:ch211-117c9.5
XM_039799702.1 mRNA upstream 134412 18874755 ~ 18886895 (-) True LOC120558627
XR_005639183.1 other downstream 852150 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1048723 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2454627 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 3884666 14845338 ~ 14853817 (-) False G49845
TU68271 other upstream 140022 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 959430 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 960987 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 966336 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1580424 20320767 ~ 20320838 (-) True trnae-uuc_54

Expression Profile