RNA id: XM_039800736.1


Basic Information

Item Value
RNA id XM_039800736.1
length 5389
RNA type mRNA
GC content 0.46
exon number 8
gene id kcnd3
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18945968 ~ 19077781 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcctcctcctcctccgtctcTTCCCACCACTCATCCCGAAAAGCCAACGAAAGACGGTCTTCACGTCGGAGTCCTCTTATATCTCCACTCGCATAATGGAAACTGAATTAAAACAGCTGTGACACGCTTTCAGAAATAACCAAACCTACATCTTGTAATTAAACTGCTCTGGAAGAAGCTCGTGTTTCTTCGGATGGAGAATTTTCAATCGCCTTTTAGAGGGTGAATGAGCTGATGTCAAGCTGGTTGTGAAGGTGCTGGACTTGTTCCCCCCTGACGCCCCAAGCCGGACACAGCATGGCGGCAGGAGTAGCGGCATGGCTTCCCTTTGCCCGGGCAGCAGCGATCGGCTGGATGCCTGTTGCCAATTTGCCCATGCCAGTGGCTCCCACTGAGAAGAACAAGCGTCAGGATGAGCTTATCATTCTTAATGTCAGTGGACGGCGCTTCGAGACCTGGAGGAACACGCTAGACCGCTTTCCAGACACCCTTCTGGGGAGCTCAGAGAAGGAGTTCTTCTACAACGAGGAGACCAAAGAGTACTTCTTCGATCGGGACCCTGACGTGTTCCGCAACGTGCTCAATTTCTACCGCACAGGCAAGCTCCACTATCCACGCTATGAGTGCATCTCCTCCTATGAGGAGGAGTTGGCTTTCTTTGGCATCATCTCAGAGATCATCGGTGACTGCTGCTACGAAGAATTCAAGGATAGGAAGAGGGAGAATGCAGAGCGTCTAATGGATGACCAGGAGGACAACAAGGACGCTAAGCTGCCCAACATGACTTTTAGGGAGACAATGTGGCGGGCTTTCGAGAACCCCCACACTTCCACCATGGCCCTTGTCTTCTACTACGTCACTGGCTTCTTCATTGCGGTCTCTGTCATCACCAATGTGGTGGAGACGGTGCCTTGCGGCTCGTCACCCAATCAGAAGGAAGTGCCATGTGGTGTACGCTACACCGTGGCCTTTTTCTGCATGGATACGGCCTGTGTCATGATCTTTACCGTGGAGTACCTGATGCGCTTGTTTGCTGCGCCAAGCCGCTACCGCTTCATGAGGTCCGTCATGAGCATCATTGATGTGGTGGCCATCTTGCCCTACTACATCGGCCTGGTGATGACTGACAACGAGGATGTGAGTGGCGCTTTTGTGACACTCCGTGTTTTCCGCGTATTCCGCATCTTTAAGTTCTCCCGTCACTCGCAGGGCCTGCGCATCCTGGGCTACACACTGAAGAGCTGTGCCTCGGAGCTGGGCTTCCTGCTTTTCTCCCTCACTATGGCCATAATTATCTTTGCTACCGTCATGTTCTACGCAGAGAAGGGTTCAAGCTCCAGCAAATTCACCAGCATCCCAGCCTCCTTCTGGTACACCATCGTTACTATGACAACACTCGGATACGGAGACATGGTTCCTAAAACGATTGCAGGGAAGATCTTTGGCTCAATCTGCTCTCTGAGTGGGGTGCTGGTAATTGCTCTGCCTGTCCCTGTCATCGTGTCCAACTTTAGCCGCATCTATCACCAGAACCAGAGAGCAGACAAGCGGCGGGCGCAGAAGGTACAGAAAGCTCGCTTGGCCAGGATACGAATATCCAAGGAAGGAAGCTCCAATGCTTTCCTCCACAGCAAGCGTAATGGCCTGTTCAACGAAGCTCTGGAGTTCACGagtTCCACTGAGGAGGAGCAGCGATTAACCAAGTCCACCTCTCTACTAGAGAGCCAGCACCACCACCTGCTGCACTGTCTGGAGAAAACCACTAATCATGAGTTTGTGGATGAGCAGTATTACCAGCAGAGCTACCTGGAGGCAGGGCTGCAAAATTACTCGTCTCGAAGCCCCTCCCTCTCCAGCCAGGATGGTGTGACTGGCACATGCTGCACCCGCCGAAGCAAGAAGCACCACACCCCTTTACCAAATGCCAGTGGCCCAGCACACATGCAGCCtttgacacatgcacacacacatcaacaaggCTTGCAGGAGCTCAGCACCATCCACATCCAGCCCCTCACCACCAGCCGCTCCAGTCTGAACATGCGCGTAGACGAGCCAGCATCCATGAACTGCCAGAGCAGCCAGATCACCACAGCAATCATCAGTATTCCAACACCGCCAGTGACGACTACTGAGGGAGATGCTCATCTGCCCGCTGGCCCCATCCACCAGAACGTTGTGAAGGTGTCTGCACTGTGAAGACTAGAGTGCAGGCACatcacacagaaagacagataaAGACTCATCGAGACAGACTGAGGGACAGAGGAGGACTGGGAATGATGGAGGAGAAGGCATTCAGAGTCCTATTCTGGCTGTGGTGGAGCCTGCCCTCTGCTGGTCATGAACTGTAATGACATGGACACCCTGTACAGACAGAGGACGGCTTTTAGATGCAGTGTATTCATGTTAGTGGTTGGCACACATGTGCACGTatgcgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgaaagaGAATTTCGTAGGGTGTCGTTTCAGATGAGGAGGCGTGTGAGAGTGTGCCTCCCAAGTGTGTGAAATGAGTCCTCAGAGTAAGTCATGTGTCACTGTGTACAAAGCACATTTTTATGATTTCTGCTTCAGTTTGACTCTTACGATCTTTTATTTAGCAGGAGCTATAAAGGGAAAAGGAAGAAATCttaaagggaaagaaagaataatacaTTATTAGAACTTTTTTGTCAACAGATCTAACCCTACCCTTTTGTGTCATTTTGGCCCACTCACCTCTTGATAGATAAATATGCCACCATTCTTTTTCAGGTCCAATATCAACCCAGTTGAgtgaaaatcctttaaaagaTGAAATATGGTAGGTGTGTCTGTGATAGCTTCATCAATGAGTTGCATATTTGTGAAGGAGTGTATGTGACTTTTTGCTAGATAAAGGAATTGTGACGTTTTGGATAGGAGGTATGTGCCTgtgagtatgtatgtgtgtgagaatggGTTTGTCTCAGTTGATTGGAAGCTTGTGTTTCCATTCTTCTGGAAGTCTCAATGGCTCAGTATATGGCATATTTGACTAGCTGCCACTCTGAAGAGTTAGTTGTACACATTTCTGTCAGAAATTCTCAGCTACAAGCCTTTTACACAATATGTGCCTGTTGCTGGAGTAAAAAGAGATTTATTTGTGTTTAGTTTTCTGAAtctccccaccaccaccacctccccaGTCTTTTCCCTTTTGGctcctacagacagacagacctcaaataaatcaattctcttacaaataaaccaaaaaaagtaggtttgaTTTAAATCACCACTATAAAAAGCACAAGGCGTTTCGCTGGGAATTTCTGACACAAATCTGTCCTGAGCCTGGGTTCTTTGTGAATATTGTTAATAgaatattttgtaatatttgACCATCGTTTGGCAGAACCAGTGAAGCTGTCTTCtcattgtctctctttctccctcagtCTGTCTTtcgctctcactctctctgtctcactctctctgtctctctctctctctctctctctctctctcgttgttGTCCTGTGGTATCCCTACCTCCTGTGTGAACAACAGTATGCTTTCAGTAGTCTTTATAGCTGTCAATGTTTTTTCTTCCCCAAACTCAGCGGGCATTTTTCGAAGTTGTTGAGTATGTGTACTCCATGTGGTTAGGAAACTTGGTGTTTGTACTTTTTGTCCTTCTTGTTGTTTCAAAggattttatttactttatctTCTGGAGAATTTAAAGCAGGGCAATATGTTGAAACGGTgaccacaaagacacagaggacACCGGATGAGCCATCCACAGATCTCTATCACCAAATACATGTGCAATTCTGTCTGTTCTGTCAACTCGCAGCACCACCATGTAACTTTAGTATTACTTTTCATCAAATCCCATCAAAGTTGACCTTCGTACCTATGGACCGTGACCTTTTAGCTCTGCTGACCTCCTAGCGGATGCCTCCCTGTTGGCTTTTTTCATCTGGAATGTCATTTTGACTCCAACAGCTACACAGAGAGGTCTGTCTTTACGTGGATGAGACCACTGCTGGGGTTTCTCCAATGCTGGGCAGGGGAACTTCAGTCACAGCAGACTAAGCCCCCACTTCTGCTCCACattgatgaaataaaatgtggagATCTAGAACACACGTACAGTGCTAGAGATGTAATAATATATCAGCATACTGTCAATATCAGCCAAGAGCATATTTCAAAAGCAATACTGGAATTGGACTAATATTATGTCTGCCCATATGTAGCTGATgtgaaagttgttgtttttttttcctgtagaAGTAGACTAACAACTGTCAGACTAGTAGCAAAATGTATAATggcctttttttaaagtatctAATTACCTTAATATGGAGACATCTGAAATACTTAACCAATTTTACACTTATTTGTACTAagacttacaaaaaaaaacacatctttatCATCTTATCAGCCAATATGGGTGGAAATACATAGCATAATGGATACCATATCAGTGCATCACTACACAAGACCCTAAGGTCCCTTTAGACTTTTGTGATTTAGTTCCCTCTGATCCTGAGGTTAGTTCCAACCTacaaaaaagccaaaaatatTCTACAGAGTTGGAGCAGGATGTGTTTTACCTCTGATATTCCTACCAGAGACCTACTACTATTGCTGGTAATTTAGTACTGTACACAGTGACAACAGCTGCCTAGATCCAGTAGAGTTAAGTCAAACTGTGCGCAAATTTAcctggagtaaaaaaaaaaagaagacaagcAGAGTTTTTTCAGTGTAATTTTAAAAGTGGGATTGAAGACATTGACTTCATATTCACAGCATCAAGTCCGACATTTAGAATCTATTGAAAACTACAAGGGTATGACATAGGTAATAGCAGAAGTGAGGtttcctgtatttttttttccttgcttGGACAGTGATTTAACGTGAATTATTTACTGCTTCCCTGTTTCAAGACAGGTTGTGTTGTGTCAGCTGCACTTTCAAATGACacagtttatttattatgtaagcATTTCTCCACTCAAAGTGTCAAAGGattgcatttttatttacaaacaacaaaaacagatgtctgtgattgtgttttgtctctctctttctctgttatgTACTCCCCTTTGATTGTCTTTTTTCTGGGCTCAGTcagtttctctctcactctttgcTTTGCCCTCCTATTCCACCTGCTGTTGTTGAGACTACTGCTGTGCGTATCTTGTCAGGTGTTGGATATTATTTATGACCTTGTCTTGTGTCCCGACTGTGAAACGCCTGATAAAACATCTATATCTGCCACAAATA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68268 lncRNA downstream 17133 18922863 ~ 18928835 (-) True G51088
TU68243 lncRNA downstream 187467 18758042 ~ 18758501 (-) True G51069
TU68241 lncRNA downstream 205625 18738483 ~ 18740343 (-) True G51068
TU68237 lncRNA downstream 232755 18712675 ~ 18713213 (-) True G51064
TU68142 lncRNA downstream 310733 18634465 ~ 18635235 (-) True G50991
TU68313 lncRNA upstream 149540 19227321 ~ 19227905 (-) True G51122
TU68349 lncRNA upstream 249871 19327652 ~ 19415195 (-) True G51147
TU68459 lncRNA upstream 378871 19456652 ~ 19459405 (-) True G51228
TU68468 lncRNA upstream 517813 19595594 ~ 19597508 (-) True G51236
TU68493 lncRNA upstream 721424 19799205 ~ 19805539 (-) True LOC120558911
XM_039800430.1 mRNA downstream 12474 18930975 ~ 18933494 (-) True parapinopsina
XM_039799702.1 mRNA downstream 59073 18874755 ~ 18886895 (-) True LOC120558627
XM_039800560.1 mRNA downstream 72799 18855940 ~ 18873169 (-) True si:ch211-117c9.5
XM_039801585.1 mRNA downstream 119196 18818842 ~ 18826772 (-) True LOC120559674
XM_039801584.1 mRNA downstream 128138 18801947 ~ 18817830 (-) True LOC120559673
XM_039800955.1 mRNA upstream 143239 19221020 ~ 19225831 (-) True capza1b
XM_039800316.1 mRNA upstream 360847 19438628 ~ 19575574 (-) True cacna2d3a
XM_039801235.1 mRNA upstream 510503 19588284 ~ 19602069 (-) True atp6ap1lb
XM_039801619.1 mRNA upstream 526975 19604756 ~ 19614597 (-) True b4galt3
XM_039801413.1 mRNA upstream 537865 19615646 ~ 19632023 (-) True bgnb
TU68271 other downstream 59215 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1059635 17839544 ~ 17886333 (-) False zbtb46
TU67800 other downstream 1256208 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 2662112 16281044 ~ 16283856 (-) True G50217
TU66615 other downstream 4092151 14845338 ~ 14853817 (-) False G49845
XR_005639384.1 other upstream 621992 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 623549 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 628898 19706679 ~ 19706800 (-) True LOC120559930
unassigned_transcript_227 other upstream 1242986 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1794927 20872708 ~ 20952518 (-) False LOC120558386

Expression Profile