RNA id: TU68493


Basic Information

Item Value
RNA id TU68493
length 6251
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC120558911
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19799205 ~ 19815318 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctaatgagtcATTGTGACATACAACCCATCCTGCTTCACTAGACCCTGCTTGACTTCTTTTGTGTTTGGTCTGCAGGACTGTGAGACACGCATCAAGGAGTTCTTCAACAATAAACTCTACATCATTGGATACGTGGGCATCGGCATTGCTGGAGTCATGgtcaTTGGGATGATCTTCAGTATGGTGCTCTGTTGTGCCATTCGCAACAGCAGAGAGGTCATCTAAGCTGGATACTTGAACTCTGCCCCTCCTGTACCTAGCCCTGAAAGACTGTACAGCCTTTAGATCCAAAGTCAACCTTTGTCCATTCAGGGACCTGGGAAATAGAtcatgttaaaaaagaaaatcctttcCACTATGGTGCTCAAACCAGCTCTTTTGGCCTGATCTTCCACtattttctctgaaatgttatttatttatttgcagtcACGAGCAAAATAGCATGCTCTACTTTCATAACTATCCACACAGTGGGAACAGTATAATGTCTGATGTTGACCTGACAATCTGTCAAATAGTTTTTTCCTCATGGCATTTGGCTGCCATTATAAATTTTAACCGACATACTGTAGCAGTAGTGTTAATGCTTTTTCACACAGCATTGACACTGACCCCTTGGCTGTGGGAAACTTTGGCCCTGAGAGAGCAATCTGAGGGGAAAGCAGCTGAGTTTGCTTATCTGTGCACCCAAATTAAGACACACATGAacgcgcacagacacacaagcacagcaATGTTGTGTTACGTGAGACCACAGCCTTAAAAAAGGTTGTCAGGAATCTCGTAGGGAATACTGATTGGTGGAATCAGAGTGGGGTTTCAAGAGAGAGGGAATGGCCAGTGAACGTTTCGGGAATGCATCCCCAGTGAATTTACTCACACACATaccgtatacacacacactgtaaactgtGTGTACAATGACAAAAATGTGCAGCTATCTTAAAGgattagttcaacattttggaatatATATTTTGGGATAACTTtattgccgagagttagattaGAAGATTGATAGCACTATCATgtcggtaaatatgaagctgcagcccacagttagcttagcttagcacaaagactggaaaaagCGGGGAAACAGCTATCCTGGCTTTGTCTTTATACTAAGCTAAACtaacagctgctggctgtagcttcatatttactttaCAGACATGATAGTAGTATTGTTAAGCAACTATAACCACATTTTAGTCCACTTACTGTACAACAAATCATGCAGACTTCATATTTTTCTTGCAATGCCAGTATGTGGTGTGTTACACAACTCAAGCAAGTTTCAAGAGTCTTctatgaaacagaaaaaaacttgCCTACAGGAAAAGTAAATCCAAGAATCAAAGCACAATCCAGCTGAACTGAAAACCAAATTCCCTTTCGTCACAAAGGAAAAGCTCCttgtatatattaatatatataatctcTCTTACCTAAGAGAGTATCCTCGAGTCTTTGTTGactgtatgtcaaaaagtcatgtGGACAGGCTAAATATATGCTAGAATAGGCAGTGGGGCTGTGGAATTTTGTTATCCAAGCCAGGCCTTTGATCTTTTCCTATCTCcatcttttttcccctctgtgcCTTAAAAGTACACCacccacaacaaaacaaaaagtgagAAATAACCCCTGTATTCCTCACATCTCATCAATCTCGGCAGATAAGAGGATTGGACAGACATGCCCATCTTGAATCACTTCCATTGATCCAGGTTCAATCAGGCCACTGTTGGGTTTATTACGGGACTCTGGTATGTAAATATGTGTGAGTTTTCTGTAGTTGTACATTATTTGTGGTTGATGTGATAGTTACGATTTAATGTGTAGACAGAGGCTTGCAGTAGTTGTACAGTGTTCATGTAGTCATGACAGTGCAATAGTCAAAGCAAATCAACGCAACTAAAACAGCTTCTTAATGTGCCTTTCTTTGATAACGAGCTATTTTTGAACAATGGGCTGTTTGAACGTAGCAAAAGATGTACATATGTTTGTAGAGTTGGACTGCAATTAATTGTCACACACATTGGACTTGCCATTATTATTTTGGTGTTTCAGTGTCAAACTCGACTGTGTCTTCATTGTCAAGAGAGTTGAAGTGGTAAATCGACAATTTGTCTGCCAACTATTTTAAAAGTCTATTGGTCATAAAAGAATAATCAGACTCTGTGGAACACGGGCCCTGGTCAttctcttattttttatttacagatTTCAATGTAATGTGAGACAAGTGAGGAGACCACCAAGGCTTTCTTACCACTCCAGCAGACAGTGTTTACTCTGAGTGATGAGACACAACAGAGTCACTTCACTGTCATTCTGTGGAGTTAAAACAGGATGAACTAGGAACAGTTTAGTGCACCTCAATCCACAAAAAGCTGTTGTGTTACTCAGTTATAGTTGTGCAAATCTGGAGATGAAACGTACCGTGCACGTAAAAAAAGACACACTGTGTACCCAGTCGAGCTTTTCATAGTTGATTGtgttaaattattttaattccATTCCAGGCTTCTCAGGAAGTAGGTGTTTGACGTTTATTAAAGCTTTTAAAGTTTTACACTGTTTCCTGGGTTTTATTTCATCACAGAGGTTCACACTTTCTGATATCAGTGTATAGTTATTTACTGCTATACTGAAATCTAGTAATCCTTTACAGGAACTGACAAGAACAGATTAGTAATTAAAATGATGCGATAGCGCACCAAATGGTCTCTTTTAGGGCCCAATTAGCATGTTTACTGGGTCATTTGGATGACTTTGCTaataaagaaaagacaaaacaggTCTTTGAATATCAGTTTATGTTCCAGATTTGAAGGGGTTGTGTGTTTTACTCAGCAAAGCTCCATATAACTTCATAAAcatgattttatttaaaaaaaaaaaaaaaggttaaaaaaggtGGGGTGCTAAGCAAAAAAGGCATATCTTTGTCTAAggcttttgactttttttttttagtatttttgCTTCTGTTTGATAGTTATTCTTGATATTCAATAACTTGTTAAATCTCTCGTCACCAAAGACATCTCTAAATCATGATAGCAGCTTCAGACACCACCATTCCACACACAGCCTTAGTCCCAACCTCCACTGGCTGCTTGGTTTCAGGCCCTGAAAATATACCAGCAAGTCCACACACTTCCAGTCCTTTCTAGTaatgaaaggaaagaaaataaaaaatttaaaataactcCACACCTCGCCAAATGTAATTTATGCACCATATTATTTTATCAGATCTTGCTTTGAAACTGTGTAGTGTAggcattagaaaaaaaaagaaaagaaaaaaaaaggaatacaaggaagatttatttttttcttctttttaagtAGAAACCTCCCCCCTACATAAACACACTTTGATTCATTTCTAAAGGAACACATGTAAAAATGAATCCCTTTAACACACatcacagtaaaaaaataaataaaatctatctatctatctatctatctatctatcttcccAGCTGATTGTATTAGATATCCCCCAGTGATTAAATAGGCTTCCAGGTTTAGTCGCATGAGTTTCATCTTTCTGCACTTGAGCTTCAAGGACAGCTGAATATTTAGTTATGCGTGTGATGCAGCAGAGGCTCCAGGACTCCCCCGGATACAGTTACCTCACTGGTGCAGCATGAGCATTTTTCCTGCCAGTGTGCGTAGCGGAGCATGGTAACACATTTTAAGCTTGCATCAGAAAAGGTTTGACACCGTCTACAGTCAACATGCTGTTATTTCCACCAGCCCTACCAGAGAATATGTGACTGAATATGCAATTCCTCAGGATATACAGCACAAATAACACAAGTAaacactgcatttacaaatATTTATTCAGCATTTAAAAATCTATATCTGAAAAATAATCTACTGAACTGGTTGAAACCATacacatatttacataaaaCTCTTGAAAGTACTTTTGACCAGTGTAGCCCGTTTCACTCTGTTCTGCTTCTAAATGCCTAACATGACACATTGGTGTGGGTTCCTGTATCTCTAACTGACAAGAAAACCTGACCAGTCACAGTCTACTTAGAGAAAGTAGCTATGTTTAGGTTAAGTTGCACCTTTTCCATAAGACTTGGTCCCAAAAGCACATTGAATCCCATTAATTAAGTACTGCCCATCATTAGACTAGTTTACCACCATCAACATATCCTCCACAAAAATGCAGCTCTCCAAAGTTAACTGGAGAAGGTCTTATTGAGTCAGAGTTCAAGCTTGCATGTTAAATAAACAATAGTTGTGTATACTGCCAGTGATTCACAGTGCCTAGTAGAAAACCCAAATACCTCAACCCCAATTGTTCTGGAAAAAACACACCAGAAAGCACCTATGGTCAGCTACAGTCTTGTAACCAATTATAAAGCAGTGTAGATTAACAGACAGGAAATCATTCCTTGTAACAAATGAGTACAACACAGGATCACTGTATGGCATACTAGTGGACAGAAAGTCcagatgttttgtttgttcGTTCATAGGCTAGGACCCCTTAAACAACCCCTTTTCCAAACCAGGTTGTTCAAAGGACAACACCTGACAATTTTGTGAGAGAAGTTATTCATCAAATTATATCCGCTTAAAAATaaacagtatatacatataccgGGATCAACATCCATGACCCAGTTTCACATGTAACCCTTTAAAACAGGATTGAAGCTATTCCAGTAATCTTTCCATATTCTGCCATTGGTATTACTTAGTAGATCCTCCCTTGCActgtaagtttttttttgcaacatgtAACAGCCACACTTAGTAGTCTCACTAGGCAGTTAGAGGGGATATACATGTTAGGTTAAAAGAGAGGCAGTCAGTGAAGGGCAATTGATATGGAGCATATTTAAGGATAAATCTAAGGCCTAATCCACACGTATActggtatttttttaaatgggtttaTCCTTTGTTCGTTCTAATAAAAATACACCCTCCCGTATACCCATGCACTGCCGAGCCAACAGGCAAAAGAAAATCCCAGTAGtgcaaagaagagaaaaaaaaaagttggacaATCAGAagcctgaaaaaaaaatgcagttacCGGAAAAGACCAGTGATGTTGGCGGCAGGGTTTGTGTCGTGCAGTGTTAGATTATGTAGCAGTGACATCTGATGAAGTGCCATTAAACAGCTAATGCGCACTTGCATTTGTCTTCTGCACCCATGTGCCACATGATAGTACGCGTACACAGTGGCACAGTGTCACGACCACACCATGCACGTTGCGCACACAACGGCATCTGCAGCCCACGTGTTAGCGAGTGAGTTGTGGAGAAGACGTAGAAGCGCATTGTGTGTACAGTTTGTCGGTGAATAAATGCTAGAACTCACCCAAGCCAAGTTAACCAGCCCGTTTCCAGCACTATTTTGGCCACGTCTGCCATTGCAAGAAATGTCGCCTCATTTGTGACACCTCACAAAAGAGGATAACAGCGCACACGCTCACGTCACAAGCCAAAAACTCAGTTTTCCctacacaacaacacagtgTTTCTAAAAGAGTTCACCCTGGCCATAGTTTCCCAAAAGCTCAGTTTACAGTGACCTAAAACACCATTGTGGACTGTGTGTGGACGAAAGGCCAACGCACTCGTTTGCGCTACCCGTGTACATGTGGACTAGGCCTAAGAAAGCAGGGGGGAAAGGTTTGGTACCACAGGAGTAGCCAAGTCTGACCACAGTGACGTCAATGTTGGACTATCAAGTCCCACAGTGAGGAAGGCCATTCTGTTCTCGCAATAATCTTCACTGAAGCTCATCGACAGGCAAGTTTAACTCTAAGATTGAGTCATGGTAAAGGCATAACTTGaaaccatttttaaataaaatggcaCCCCTCTGGTCACTTTAGCTTTTTACTCAGAAAGCCTCCAAAAATAAAGAAGTTACACAGTAATAATGAGCTGGGTCAATGGCTATGCCCAGGGCATAGCTGCCTGTAATTTAATGAGGCAGCAGAAATACTAGGAAACAACTTGTTTATGCAGAGTAAATGTTGTGGGGTGTGTACCCCAGCAGGAACTCTCCAACTCCTACAAAGTACACAACCTGTGCAATGCCAAAGAGTGGGGCAATAACAAGGGCCCGGCAACTGGCCCCCTTCAGGAATGCTGCGGGACCCTCCTTTCTCAGGATCTTTCTGCAATGGAAGAGTGAGCAAAGGGTTAGCATGCAAACTCTGGTGAGGGCAAGGC

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68468 lncRNA downstream 201697 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 339800 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 384010 19327652 ~ 19415195 (-) True G51147
TU68313 lncRNA downstream 571300 19227321 ~ 19227905 (-) True G51122
TU68282 lncRNA downstream 848769 18948833 ~ 18950436 (-) False kcnd3
TU68516 lncRNA upstream 19872 19825411 ~ 19850660 (-) True G51266
TU68785 lncRNA upstream 257569 20063108 ~ 20063536 (-) True G51468
TU68775 lncRNA upstream 260323 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 260323 20065862 ~ 20072831 (-) True G51467
TU68779 lncRNA upstream 260323 20065862 ~ 20073593 (-) False G51467
XM_039800212.1 mRNA downstream 45766 19716768 ~ 19753439 (-) False camkvl
XM_039800211.1 mRNA downstream 45766 19716768 ~ 19753439 (-) True camkvl
XM_039800204.1 mRNA downstream 82894 19698028 ~ 19716311 (-) False uba1
XM_039800203.1 mRNA downstream 84549 19698028 ~ 19714656 (-) True uba1
XM_039800221.1 mRNA downstream 101664 19689551 ~ 19697541 (-) False arhgef3l
XM_039800277.1 mRNA upstream 17104 19822643 ~ 19823653 (-) True ngfa
XM_039800241.1 mRNA upstream 178895 19984434 ~ 19988995 (-) True LOC120558903
XM_039800236.1 mRNA upstream 185377 19990916 ~ 19996340 (-) False etv7
XM_039800235.1 mRNA upstream 185379 19990918 ~ 19996337 (-) True etv7
XM_039800206.1 mRNA upstream 198663 20004202 ~ 20041438 (-) True LOC120558880
XR_005639385.1 other downstream 92405 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 97754 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 99311 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 912452 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 1912872 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 515228 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 1067169 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 1078399 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 1078399 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 1078399 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile