RNA id: TU68785


Basic Information

Item Value
RNA id TU68785
length 429
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G51468
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20063108 ~ 20063536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttcacgtttatgttgtgtttaaaccccctaccgctagatggctatgctgagacacaccactaatgtccttgcctaacagtgcctagcagtgcctgactttttgctagaagctaacaatgtagctatggctgaactttggcctactttagcatataaacattttctcactaagaacctgttaaccacaatcccaaactggcagtttgattttctgtgtactgaattgtttacctaaagtaaacttatttgacttttatgcacattgtgtctttttttaaatattattttttcgaAAGttaatatatcgccttacgcacagtatcgaaatatattgcaatatgttgaATGGTGACCCATATATCCTGATACGTATcatatcgccagattcttgcaaatacacagccctagtactttaaatatcaaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68516 lncRNA downstream 212448 19825411 ~ 19850660 (-) True G51266
TU68493 lncRNA downstream 257569 19799205 ~ 19805539 (-) True LOC120558911
TU68468 lncRNA downstream 465600 19595594 ~ 19597508 (-) True G51236
TU68459 lncRNA downstream 603703 19456652 ~ 19459405 (-) True G51228
TU68349 lncRNA downstream 647913 19327652 ~ 19415195 (-) True G51147
TU68775 lncRNA upstream 2326 20065862 ~ 20072831 (-) False G51467
TU68777 lncRNA upstream 2326 20065862 ~ 20072831 (-) True G51467
TU68779 lncRNA upstream 2326 20065862 ~ 20073593 (-) False G51467
TU68847 lncRNA upstream 235515 20299051 ~ 20300666 (-) True G51518
XR_005639206.1 lncRNA upstream 304450 20367986 ~ 20382875 (-) True LOC120558923
XM_039800206.1 mRNA downstream 21670 20004202 ~ 20041438 (-) True LOC120558880
XM_039800236.1 mRNA downstream 66768 19990916 ~ 19996340 (-) False etv7
XM_039800235.1 mRNA downstream 66771 19990918 ~ 19996337 (-) True etv7
XM_039800241.1 mRNA downstream 74113 19984434 ~ 19988995 (-) True LOC120558903
XM_039800277.1 mRNA downstream 239455 19822643 ~ 19823653 (-) True ngfa
XM_039800251.1 mRNA upstream 57309 20120845 ~ 20134632 (-) False tnnt2a
XM_039800248.1 mRNA upstream 57309 20120845 ~ 20134632 (-) False tnnt2a
XM_039800250.1 mRNA upstream 57309 20120845 ~ 20134632 (-) False tnnt2a
XM_039800247.1 mRNA upstream 57309 20120845 ~ 20134632 (-) False tnnt2a
XM_039800245.1 mRNA upstream 57309 20120845 ~ 20134632 (-) False tnnt2a
XR_005639385.1 other downstream 356308 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 361657 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 363214 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1176355 18880365 ~ 18886753 (-) False LOC120558627
XR_005639183.1 other downstream 2176775 17839544 ~ 17886333 (-) False zbtb46
unassigned_transcript_227 other upstream 257231 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639106.1 other upstream 809172 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 820402 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 820402 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 820402 20883938 ~ 20952518 (-) False LOC120558386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU43548 True 5695 lncRNA 0.38 2 CI01000005 4209148 ~ 4215199 (-)