RNA id: TU68912


Basic Information

Item Value
RNA id TU68912
length 349
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G51574
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20722650 ~ 20722998 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATAAGTCAAATTGATGTTTTTACAGTTATGGTAACACACTTGGGTTAATATTAAAATGCATGCGTGAGTGCCCCAATAGAGTTATGTTCACAGttaattcatttaatttcagatacaattacatttctgttttacatttcattGAGAGAAAAACAGCTGTTGTGTTCTAATTTATTGTCAAGTCTTTATTGCCACTTGCAGTGAACACTCGACCTGTTCCTCTGTGTAAATGTTTGAGGAGGTGTTCACTGAGGTGTCCAGGAAAATGGGAGTAACCCGGACAGAGGAATTGAAATTTTAATGATGACCAGCACCACCACGCTGATGGCCATTGAGCACCTCAGACA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68904 lncRNA downstream 59073 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA downstream 59074 20662428 ~ 20663576 (-) False LOC120558476
TU68877 lncRNA downstream 280843 20441496 ~ 20441807 (-) True G51544
XR_005639206.1 lncRNA downstream 339775 20367986 ~ 20382875 (-) True LOC120558923
XR_005639207.1 lncRNA downstream 339775 20367996 ~ 20382875 (-) False LOC120558923
TU68915 lncRNA upstream 2629 20725627 ~ 20725901 (-) True G51577
TU68928 lncRNA upstream 139228 20862226 ~ 20952782 (-) True G51589
TU68930 lncRNA upstream 159976 20882974 ~ 20952782 (-) False G51589
TU68929 lncRNA upstream 197697 20920695 ~ 20952782 (-) False G51589
TU68967 lncRNA upstream 302135 21025133 ~ 21031699 (-) True G51614
XM_039800269.1 mRNA downstream 290919 20409537 ~ 20431731 (-) True LOC120558914
XM_039800238.1 mRNA downstream 394311 20325451 ~ 20328339 (-) True fkbpl
XM_039800262.1 mRNA downstream 401118 20317192 ~ 20321532 (-) False ccdc115
XM_039800261.1 mRNA downstream 402387 20317192 ~ 20320263 (-) True ccdc115
XM_039800215.1 mRNA downstream 406628 20311426 ~ 20316022 (-) True si:dkey-109j17.5
XM_039800315.1 mRNA upstream 7108 20730106 ~ 20740959 (-) True copz1
XM_039800290.1 mRNA upstream 28585 20751583 ~ 20754530 (-) True hnrnpa1b
XM_039801897.1 mRNA upstream 77101 20800099 ~ 20808534 (-) True hoxc1a
XM_039799366.1 mRNA upstream 94420 20817418 ~ 20820599 (-) True LOC120558390
XM_039799361.1 mRNA upstream 97173 20820171 ~ 20875281 (-) False LOC120558386
unassigned_transcript_227 other downstream 401812 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 1015850 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 1021199 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 1022756 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1835897 18880365 ~ 18886753 (-) False LOC120558627
XR_005639106.1 other upstream 149710 20872708 ~ 20952518 (-) False LOC120558386
XR_005639105.1 other upstream 160940 20883938 ~ 20952518 (-) False LOC120558386
XR_005639108.1 other upstream 160940 20883938 ~ 20952518 (-) False LOC120558386
XR_005639104.1 other upstream 160940 20883938 ~ 20952518 (-) False LOC120558386
XR_005639110.1 other upstream 160940 20883938 ~ 20952009 (-) False LOC120558386

Expression Profile