RNA id: TU68930


Basic Information

Item Value
RNA id TU68930
length 1741
lncRNA type read_through
GC content 0.41
exon number 4
gene id G51589
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20862226 ~ 20952782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttacaaatatggTTTTAATATTGTAATGcataaaacattacattttcaacATGAGAATTCTAATTGAATTTCCAAGACGTTTTGATGTATTGCAGCAACAGTGATTTATGAGAGCATGGTTGCAATGCAGCTTCCTACCACCAGTGGCAGCACTCAGGTAGGTCAGCACCATGGATGCATTAGGTCAGCACAGGTAAGcgataaagaagaaaaaagatggCGTCGCGCGCCATCTTTGAATTTTACAGTGTTCGCAAAGACTTATAGAATTACGCGGCCTCCTTAAGATTTAGCTGAAGTTTTGTAACTGTACAGTGACCTGGAATAAACTTTTCCCATTATGACATATCGTCGATAAGTCCCGCTTACTTCGAGATTGATGATGTTATGGCTCGTGCTTCCGAATCTGACCGGAGAACAGCCAGCAACAGCCCGTGACTTCATCCAGCCCATaaaAAGTCCCCTAAAAGTTGTTGCTCTGGCTCATGCACTCTGGAACCACCAATGGCTTCATCCACTCATCATGAGGTGTGTGTTATTGACCACGAAGGACAGGTAGGACTTTTGACGTCTCACACCAACACCAGTAATCCGCAGCAAGCAGCCATACTGTCTACACAGCGAGAGGAAATGACAATACGACGTCGCCCACAATATAACGATTAAAGGCACTCCTCGCACAAGGAAGAAGAGGTGTCCATATTCCAAGTTTCAGATTCGAGAGCTGGAGCGGGAATTCTTCTTTAATGTTTACATCAACAAAGAGAAAAGGCTTCAGCTTTCCCGAATGTTAAACCTCACCGATCGCCAGGTTAAAATTTGGTTTCAGAATAGAAGAATGAAAGAGAAGAAGCTGAGCAGAGATCGCCTCCAGTACTTCTCTGGAAACCCCCTATTGTGAGCAGGAGCAGAAAGTGTCACAATCTTGGTCAGTGACATTAAGGCCTACTCTAATCTCATTGAGTTGTAATCGTGGGCATAACCATTTTCTAAAGGAGCCCATATCACCAACAGTGCAATGTTAAAGTGGACAGTAGGAGTAATAGGCCTGCATGGGATGAAGTCGCCATTTTCGTATTGCCCCACGGGCGACGGTGAATTTCTAGCTGGTCCCCAGAAAGGCCTTCATGGTTAGAATAATCATTTATACCTATGCTGTTCTTGAATATGTCTCTATTTATCACGATTCTCCATTGTGTTTATTATATTGTTCATATAGACATACTTGTTGTTAAAATATCAAATGTAACAACCAGTTTGAATCCTTATTGCGCAGACAACTTTTAGCTCTTCCCCGTTCCTCTGGTCTATGTATATAGCATATTATCTAATTATTTCTCGACCAGAGATATGAACAAGTTATAGCAAATCTCCTGGCTACATTTTTCGCAATTAAGAACTCTGACGTCCAATCTGTGAAAGTATATCCCCCTGTACAGAGCAGCCTATGCAATTTGCATTTGTGACTGTAAATAGGCGTATATGTTGAATTTCCTTTCCCCTATCCCTGCTGCTATTTTTCACTACACTGCCCATACAACTTTAACAGCTTTAACGCCAACACTCGTTAAATTATTTGCTTAAAACATTGGTGCTTTGGATTCCAGAGAGGAGGAACAGATTGTTGGCCTGTGTATcattaatataatacatatgAAATAAACAGAAACGTATAGGCAAAACTCAACGACTTTGTGCTTTTTGTGCTATCATTGTCACATTTACCATTACTGATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68915 lncRNA downstream 157073 20725627 ~ 20725901 (-) True G51577
TU68912 lncRNA downstream 159976 20722650 ~ 20722998 (-) True G51574
TU68904 lncRNA downstream 219397 20662353 ~ 20663577 (-) True LOC120558476
XR_005639129.1 lncRNA downstream 219398 20662428 ~ 20663576 (-) False LOC120558476
TU68877 lncRNA downstream 441167 20441496 ~ 20441807 (-) True G51544
TU68967 lncRNA upstream 72351 21025133 ~ 21031699 (-) True G51614
TU68973 lncRNA upstream 84300 21037082 ~ 21041944 (-) True G51620
TU68958 lncRNA upstream 93267 21046049 ~ 21048786 (-) True G51606
TU69031 lncRNA upstream 213940 21166722 ~ 21167748 (-) True G51673
TU69042 lncRNA upstream 246558 21199340 ~ 21199849 (-) False esyt1a
XM_039799361.1 mRNA downstream 7693 20820171 ~ 20875281 (-) False LOC120558386
XM_039799359.1 mRNA downstream 7693 20820171 ~ 20875281 (-) True LOC120558386
XM_039799363.1 mRNA downstream 7693 20851072 ~ 20875281 (-) False LOC120558386
XM_039799362.1 mRNA downstream 7693 20862507 ~ 20875281 (-) False LOC120558386
XM_039799370.1 mRNA downstream 18651 20861762 ~ 20864323 (-) True hoxc9a
XM_039799485.1 mRNA upstream 10964 20963746 ~ 21006268 (-) True rarga
XM_039799486.1 mRNA upstream 10964 20963746 ~ 20983430 (-) False rarga
XM_039799487.1 mRNA upstream 10964 20963746 ~ 20982399 (-) False rarga
XM_039800109.1 mRNA upstream 96062 21048844 ~ 21066026 (-) False rbms2b
XM_039800110.1 mRNA upstream 96255 21049037 ~ 21064482 (-) True rbms2b
unassigned_transcript_227 other downstream 562136 20320767 ~ 20320838 (-) True trnae-uuc_54
XR_005639385.1 other downstream 1176174 19706679 ~ 19706800 (-) True LOC120559930
XR_005639383.1 other downstream 1181523 19701330 ~ 19701451 (-) True LOC120559928
XR_005639384.1 other downstream 1183080 19699773 ~ 19699894 (-) True LOC120559929
TU68271 other downstream 1996221 18880365 ~ 18886753 (-) False LOC120558627
XR_005639338.1 other upstream 215189 21167971 ~ 21199043 (-) True fmnl3
XR_005639356.1 other upstream 1020919 21973701 ~ 22015043 (-) False si:dkey-151g10.3
XR_005639375.1 other upstream 1270367 22223149 ~ 22229421 (-) False LOC120559880
TU69738 other upstream 1576824 22529606 ~ 22530708 (-) True G52226
XR_005639228.1 other upstream 2261316 23214098 ~ 23218900 (-) False si:ch211-150o23.3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_01139343_01141069.mRNA True 1567 mRNA 0.43 2 CI01000057 1139039 ~ 1141438 (+)
striped catfish (Pangasianodon hypophthalmus) TU369043 True 1100 lncRNA 0.35 3 NC_047614.1 20967715 ~ 20968865 (+)