RNA id: TU74813


Basic Information

Item Value
RNA id TU74813
length 324
lncRNA type sense_over
GC content 0.51
exon number 3
gene id cxxc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38412062 ~ 38439413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctctctctctctctctctccatctgtctgtctctctctccaggtGACAGAAGGTGATGGTGAGGACACAGATCTTCAGATCTTCTGTGTGTCCTGCAGTCATCCCGTGAACCCCAAGGTGGCGCTGAGACACATGGAGAGATGCTACGCTAAGTATGAGAGTCAGACATCATTTGGTTCCATGTACCCAACACGAATTGAGGGGGCGACCCGGTTGTTCTGTGACGTGTATAACCCTCAGAGTAAGACCTACTGTAAGCGGCTCCAGGTTTTGTGTCCTGAACACTCCCGAGATCCCAAGGTAACCGTGGTAACCGTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74805 lncRNA upstream 21754 38353890 ~ 38405394 (+) False G55946
TU74804 lncRNA upstream 21754 38353905 ~ 38405394 (+) False G55946
XR_005639125.1 lncRNA upstream 34606 38380594 ~ 38392542 (+) False LOC120558454
TU74803 lncRNA upstream 71202 38353905 ~ 38355946 (+) False G55946
TU74832 lncRNA upstream 96205 38329663 ~ 38330943 (+) True G55967
TU74820 lncRNA downstream 1058 38431566 ~ 38437103 (+) True G55957
TU74815 lncRNA downstream 6911 38437419 ~ 38439409 (+) False cxxc1a
TU74814 lncRNA downstream 24818 38455326 ~ 38501868 (+) True G55951
TU74857 lncRNA downstream 32108 38462616 ~ 38495712 (+) True G55988
TU74850 lncRNA downstream 51572 38482080 ~ 38486003 (+) True G55982
XM_039799294.1 mRNA upstream 49494 38362482 ~ 38377654 (+) True rtca
XM_039801731.1 mRNA upstream 124721 38273260 ~ 38302427 (+) True mecp2
XM_039800475.1 mRNA upstream 434131 37953744 ~ 37993017 (+) True srpk3
XM_039800788.1 mRNA upstream 485178 37743984 ~ 37941970 (+) True plxnb3
XM_039800474.1 mRNA upstream 693751 37716912 ~ 37733397 (+) True LOC120559052
XM_039800963.1 mRNA downstream 10894 38441402 ~ 38473917 (+) True hdac6
XM_039800483.1 mRNA downstream 58001 38488509 ~ 38497459 (+) True lhfpl4b
XM_039800485.1 mRNA downstream 140648 38571156 ~ 38603728 (+) True irak1
XM_039801967.1 mRNA downstream 183695 38614203 ~ 38623939 (+) True LOC120559889
XM_039801383.1 mRNA downstream 198452 38628960 ~ 38672644 (+) True hcfc1b
TU74841 other upstream 34570 38380627 ~ 38392578 (+) True LOC120558454
TU74758 other upstream 260148 38111171 ~ 38167000 (+) False G55919
TU74760 other upstream 260148 38111171 ~ 38167000 (+) False G55919
TU74653 other upstream 693872 37686769 ~ 37733276 (+) True G55842
TU74652 other upstream 711167 37686769 ~ 37715981 (+) False G55842
TU74819 other downstream 5572 38436080 ~ 38437223 (+) True G55956
TU74811 other downstream 140673 38571181 ~ 38580336 (+) False irak1
TU74910 other downstream 374904 38805412 ~ 38936013 (+) False LOC120559064
TU74943 other downstream 429265 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 444319 38874827 ~ 38899283 (+) True G56033

Expression Profile