RNA id: TU74815


Basic Information

Item Value
RNA id TU74815
length 1969
lncRNA type sense_over
GC content 0.40
exon number 2
gene id cxxc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38412062 ~ 38439413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttcggtggccgaatattcggtgcatccctactctCAACAATTAACATCACGGTAATGGCTGGAGAACAGAACTTaatcctgtctctctgtctctgtgtgtgtgtgtgtctgtctgcctgtctgtgtgtctctctgtctgtctgtctgtctttctggccctctctctgtgtctgtctgtctgtctgcctgcctgcctctctctctccgtctgtctgtctccctgtctgtctctctctctctctctctctgtctgtctctccgtctgtctgtctccctgtctgtctctctctctctctctctgtctgtctctctctctgtctgtctccctgtctgtctctctctctcagtggtATAAGCTGGACGAGCTGTTTGAGCAGGAGAGGAACTTGAGGACAGCGATGACGAATCGAGCCGGTTTATTGGCTCTGATGCTGCACCAGACCATCCAGCACGACCCAATCACAACCGACCTGCGCTCTGCCAaggacaggtagacagacagacagacagacagacagacagacagacagacagacagagctcttctgtctgaaatgtgtttgaatatttcagtctgaGAACATGCACATTACAGAGCCGTCTGTCCCTCTGTATCTCGGTTGATATCAGTATTATCAGAGTCATCTTTAATGTTTCTATACTGTTTTATTCCTGAAGAACTACACTACCCATAACTCCCCCAGTCGGAGACGTAAACCACTACAGTCCAGCAGAATCAAGTGTTCAATAATCTATAAAACAATAcggcattatgaaataaatacaGAGAAAATATGTGATGTTTATATAGTGCAATACATGTTTAAtcctttcacaataagagctcATTGCAGGTTATTCCAGACAGATCGACAGGCAAGCACTTTTTTGATCCTTACGACTAAATGCATTGTTACAGCACATTAATATCAATCAATATAACTCAAATCTGAAGCTAAACTCAACACAACACTACGGTTTCATCATCAAGTCTTTCTGCTTTGGTTTAAATCAGGAGGGTCTAACTCAACTTCTCTAAGGGCCAGACATGCAGAGTTTAtagacatgcttttatttcatcgaaaagtcaaatatttttgacTGTTTTGTATATCTCACGTAGCAGGAGTGTCAAACTcgactggaaaataagaatcacatcaggggcctgacatgtttagtttattaacatgcttttatttaagagaaaagtcaaatatcttccTGATATAGTCTTCTCtcttacagtttggtcaacataaagccccaaaaaaaatcagcaaaaagttcctcagccatcagaGATGTCTGAGGAACCTGGTGATAGTCTGCTACCAGACTATCACCAGCCTGTTTCCAGGCTGGTGATAGTCTGCTACCTGGTGATACTCTGCTACCTGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGTCTGCTACCAGGTGATAGCAAtatctttttccaaagttttttttttcacaatgtttttgtcatttttttcagccttttcagCGTTTTTCTCAATGATGGCTAAGGACGTATTTTCCTAACTTTTTcggggctttatgtggaccaaactgtaagagaGAAGACTTTATGAGACATGctataatacagtcaaagatatgttacttttgtcttaaattAACGCATGttaataaactctacatgtctggccctggatGACAATAATAGCATTTTCTTGGCATATAAATCTATATCTCTTCTGTATTTCTTCATATggttgtgtatttatttaatattgaacacTTGTGTGAATGATACGCACACGACATGCAGCTAAAACTTCAATATGTTCTTATATTATCTCATTTTATATCACAGTGTTATCACTACAGTTGGTTTTATATCTGATATTGTTCCATCATGTTGTTTTCTACTCGTTGTTCATGTTGTATTCAAAGTGATGTTTCATTAAAAAACTGACGATCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74820 lncRNA upstream 316 38431566 ~ 38437103 (+) True G55957
TU74813 lncRNA upstream 6911 38427148 ~ 38430508 (+) False cxxc1a
TU74805 lncRNA upstream 32025 38353890 ~ 38405394 (+) False G55946
TU74804 lncRNA upstream 32025 38353905 ~ 38405394 (+) False G55946
XR_005639125.1 lncRNA upstream 44877 38380594 ~ 38392542 (+) False LOC120558454
TU74814 lncRNA downstream 15917 38455326 ~ 38501868 (+) True G55951
TU74857 lncRNA downstream 23207 38462616 ~ 38495712 (+) True G55988
TU74850 lncRNA downstream 42671 38482080 ~ 38486003 (+) True G55982
TU74821 lncRNA downstream 54341 38493750 ~ 38497923 (+) True G55958
TU74816 lncRNA downstream 59344 38498753 ~ 38577831 (+) True G55953
XM_039799294.1 mRNA upstream 59765 38362482 ~ 38377654 (+) True rtca
XM_039801731.1 mRNA upstream 134992 38273260 ~ 38302427 (+) True mecp2
XM_039800475.1 mRNA upstream 444402 37953744 ~ 37993017 (+) True srpk3
XM_039800788.1 mRNA upstream 495449 37743984 ~ 37941970 (+) True plxnb3
XM_039800474.1 mRNA upstream 704022 37716912 ~ 37733397 (+) True LOC120559052
XM_039800963.1 mRNA downstream 1993 38441402 ~ 38473917 (+) True hdac6
XM_039800483.1 mRNA downstream 49100 38488509 ~ 38497459 (+) True lhfpl4b
XM_039800485.1 mRNA downstream 131747 38571156 ~ 38603728 (+) True irak1
XM_039801967.1 mRNA downstream 174794 38614203 ~ 38623939 (+) True LOC120559889
XM_039801383.1 mRNA downstream 189551 38628960 ~ 38672644 (+) True hcfc1b
TU74819 other upstream 196 38436080 ~ 38437223 (+) True G55956
TU74841 other upstream 44841 38380627 ~ 38392578 (+) True LOC120558454
TU74758 other upstream 270419 38111171 ~ 38167000 (+) False G55919
TU74760 other upstream 270419 38111171 ~ 38167000 (+) False G55919
TU74653 other upstream 704143 37686769 ~ 37733276 (+) True G55842
TU74811 other downstream 131772 38571181 ~ 38580336 (+) False irak1
TU74910 other downstream 366003 38805412 ~ 38936013 (+) False LOC120559064
TU74943 other downstream 420364 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 435418 38874827 ~ 38899283 (+) True G56033
TU74949 other downstream 439607 38879016 ~ 38880382 (+) True G56035

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU252603 True 1174 lncRNA 0.41 2 NC_035918.1 188379 ~ 190341 (-)