RNA id: TU74814


Basic Information

Item Value
RNA id TU74814
length 1627
lncRNA type read_through
GC content 0.41
exon number 2
gene id G55951
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38455326 ~ 38501868 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacatgcacacacacacacatacacacacacacacacacacatacacacacacacatacgcagacaaacacaaacacacacacatacgcagacaaacacaaacacacacacacatacacccacatacacacatacgcagACACATACAAATACGCACATacgcagacaaacacaaacacacacacacatacatacacatacacacatacgcagacacatacacacatacgcaacacatacacatacatacacacatacacacacacacatacacacacacacatacgcagacaaacacaaacacacacacacacatatacacacacccacatacacacatacgcacacatacacacatacgcagacacacttgcacgcacacacagacacacacacatagacacacacacacaatttgtaTAGGAGCCAGTCAAAAATGATTTTGGGCCAGTAGAATTTGCCCGACCAGACAAGTGAAAACAATCCTTAGCGTAGAACGGTGAACTGTGACAGATCAAGTTTCTGGTCTTTCTGGTCCGGCCCGGTTGAGGTCCGATTAGGGGTACTGTAAGTGGCCCAGGACCTAAcatgagtttgacccccctggaTTAGAGCCTGTGTCCCAGCTCGTTCATATTGTATAGTTTCATTGTGTCTGTGTTGATGTGTTGCCCATTCTCTGCATCTCTCCAGCATCAAGTACATCCAGTTCAAATGCACCTTTGAACCAGAAGCAGCACTTTAGACGTGTGGTACTGTGTGTTACTGTACTGTCAGGGTGTTATTCCTAAATATTAAAGTTTGTTTTTCTATTGTAACATTTTGCTGACCTAATGTTTTATATTAGGGATCGACCGGGCTGATATTTGGCAGTTTGGAGATAAgatctgtatcagcgttttatttgcctgataactgataaagttCATTAATTATGAAGTGCGCTACTTCTAAGTGTCTGACgtcagtcagcgtccactaaaagttctgttttttgcagctgacagactcagattattattctaagtgtgtgacaacattatggagaggatccctacagagctagacctttaaaacctctttgagacctttctgtttaaccagaaacagctctgaagtcgctagcgctaaacccaccagactccatttaaaaaaacactacttTTAGCGTTTATAGAGCCAGCGTATTTCCagatgtaaatcagtaaactgtgtgtttatttcaaccacaaCTAGAgatgtgatggttggaaaagtggaaagacgatcCAAAAACGGCTTTTTGTAGTTTAATCTTGTTTCTGTCGACCTTGAATGTTGTCTCTTGctaatgctaaaattactgtttatttacatggagtctggtggctttagtaAATTTAattttgcagatgtttttatgtttaaaaaaaggatggGGGGTTGCACTGGCGTACATTACCCCCCTGTAATGTACACCAGTGCCTGCAGGATATAACCAGACCTTTTCCACTCACTGCTTGCCATGAAGAAGTGAGGaaaactgtatttatatttttttattaaaaagttgTAATGGGATgaaactagagctgggcaatatataaatattatatcgatatcgtgatatgagactagatatcg

Function

GO: NA

KEGG:

id description
ko04728 Dopaminergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74802 lncRNA upstream 4654 38353905 ~ 38450672 (+) True G55946
TU74815 lncRNA upstream 15917 38437419 ~ 38439409 (+) False cxxc1a
TU74820 lncRNA upstream 18223 38431566 ~ 38437103 (+) True G55957
TU74813 lncRNA upstream 24818 38427148 ~ 38430508 (+) False cxxc1a
TU74805 lncRNA upstream 49932 38353890 ~ 38405394 (+) False G55946
TU74843 lncRNA downstream 33879 38535747 ~ 38537137 (+) True G55976
TU74870 lncRNA downstream 36895 38538763 ~ 38543507 (+) True G55996
TU74886 lncRNA downstream 138807 38640675 ~ 38641106 (+) True G56007
TU74887 lncRNA downstream 142991 38644859 ~ 38659272 (+) True G56008
TU74888 lncRNA downstream 175457 38677325 ~ 38677715 (+) True G56009
XM_039800482.1 mRNA upstream 15913 38412062 ~ 38439413 (+) True cxxc1a
XM_039799294.1 mRNA upstream 77672 38362482 ~ 38377654 (+) True rtca
XM_039801731.1 mRNA upstream 152899 38273260 ~ 38302427 (+) True mecp2
XM_039800475.1 mRNA upstream 462309 37953744 ~ 37993017 (+) True srpk3
XM_039800788.1 mRNA upstream 513356 37743984 ~ 37941970 (+) True plxnb3
XM_039800485.1 mRNA downstream 69288 38571156 ~ 38603728 (+) True irak1
XM_039801967.1 mRNA downstream 112335 38614203 ~ 38623939 (+) True LOC120559889
XM_039801383.1 mRNA downstream 127092 38628960 ~ 38672644 (+) True hcfc1b
XM_039800486.1 mRNA downstream 285453 38787321 ~ 38804328 (+) True LOC120559063
XM_039801376.1 mRNA downstream 309230 38811098 ~ 38814870 (+) False LOC120559555
TU74819 other upstream 18103 38436080 ~ 38437223 (+) True G55956
TU74841 other upstream 62748 38380627 ~ 38392578 (+) True LOC120558454
TU74758 other upstream 288326 38111171 ~ 38167000 (+) False G55919
TU74760 other upstream 288326 38111171 ~ 38167000 (+) False G55919
TU74653 other upstream 722050 37686769 ~ 37733276 (+) True G55842
TU74811 other downstream 69313 38571181 ~ 38580336 (+) False irak1
TU74910 other downstream 303544 38805412 ~ 38936013 (+) False LOC120559064
TU74943 other downstream 357905 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 372959 38874827 ~ 38899283 (+) True G56033
TU74949 other downstream 377148 38879016 ~ 38880382 (+) True G56035

Expression Profile