RNA id: TU74816


Basic Information

Item Value
RNA id TU74816
length 818
lncRNA type sense_over
GC content 0.46
exon number 5
gene id G55953
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38498753 ~ 38577831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGGAGGCCCAGGTAAATAATGAGATTTTTGTCTGTTCCTGCAGTGACCACAGGTCTGCTGATGTCGGCGTAGAGTAACCAGgCGCGGTTGGTCGTCGCATGATGAAGAAAAGGAGCATTGAGAGAATATATTGATCCCATTCAGTATGTCCATATTAACATCAGTAAAGTATTagaagcaggggtgtcaaacatgCGGCCCATGGGCCAGAACCAGTCCGCTCAAAGGCTCCAATCAGGCCCACAGGATGACTTTGCAAAAGTGTGAAAAAGGCTGGTCGGGGTTAAAGGAGAAATCTGGCGCTAAATGAACCCAGGGGTTAATAACGTGTACCgagagtcgaccgttctctgaaacatgttttcatgctaatcgaatgtgaccagttttagcgctaaccgctaattagcttataacgctagtcgtcagggcagagggtaaatctctatttctgtaccactaacaaggctcaaaatatcaccacatacacacacagacacacacacataccacacacacacacacacatacacacacacacacacatacacacacacacacacacacacacacacacacacagatatacagacacacacacacacagatatacagacacacacacacacacacacacacacacacagatatacagacacacacacacacacagatacagacacacacacacacagatatacagacacacacacacacacacacacacacacacagatatacacacacacacacacacacacacacacacacacacacacacacacagagatatacacacacacacacagagatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74821 lncRNA upstream 830 38493750 ~ 38497923 (+) True G55958
TU74857 lncRNA upstream 3041 38462616 ~ 38495712 (+) True G55988
TU74850 lncRNA upstream 12750 38482080 ~ 38486003 (+) True G55982
TU74815 lncRNA upstream 59344 38437419 ~ 38439409 (+) False cxxc1a
TU74820 lncRNA upstream 61650 38431566 ~ 38437103 (+) True G55957
TU74886 lncRNA downstream 62844 38640675 ~ 38641106 (+) True G56007
TU74887 lncRNA downstream 67028 38644859 ~ 38659272 (+) True G56008
TU74888 lncRNA downstream 99494 38677325 ~ 38677715 (+) True G56009
TU74928 lncRNA downstream 101574 38679405 ~ 38680617 (+) True G56020
TU74924 lncRNA downstream 112985 38690816 ~ 38691562 (+) True G56016
XM_039800483.1 mRNA upstream 1294 38488509 ~ 38497459 (+) True lhfpl4b
XM_039800963.1 mRNA upstream 24836 38441402 ~ 38473917 (+) True hdac6
XM_039800482.1 mRNA upstream 59340 38412062 ~ 38439413 (+) True cxxc1a
XM_039799294.1 mRNA upstream 121099 38362482 ~ 38377654 (+) True rtca
XM_039801731.1 mRNA upstream 196326 38273260 ~ 38302427 (+) True mecp2
XM_039801967.1 mRNA downstream 36372 38614203 ~ 38623939 (+) True LOC120559889
XM_039801383.1 mRNA downstream 51129 38628960 ~ 38672644 (+) True hcfc1b
XM_039800486.1 mRNA downstream 209490 38787321 ~ 38804328 (+) True LOC120559063
XM_039801376.1 mRNA downstream 233267 38811098 ~ 38814870 (+) False LOC120559555
XM_039801348.1 mRNA downstream 233272 38811103 ~ 38814869 (+) False LOC120559555
TU74819 other upstream 61530 38436080 ~ 38437223 (+) True G55956
TU74841 other upstream 106175 38380627 ~ 38392578 (+) True LOC120558454
TU74758 other upstream 331753 38111171 ~ 38167000 (+) False G55919
TU74760 other upstream 331753 38111171 ~ 38167000 (+) False G55919
TU74653 other upstream 765477 37686769 ~ 37733276 (+) True G55842
TU74910 other downstream 227581 38805412 ~ 38936013 (+) False LOC120559064
TU74943 other downstream 281942 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 296996 38874827 ~ 38899283 (+) True G56033
TU74949 other downstream 301185 38879016 ~ 38880382 (+) True G56035
TU74909 other downstream 308537 38886368 ~ 38936013 (+) False LOC120559064

Expression Profile