RNA id: XR_005639125.1


Basic Information

Item Value
RNA id XR_005639125.1
length 787
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC120558454
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38380594 ~ 38392578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTTGTTCAATCAGAGTTTACTCTCGGAGCGTCGTCAAGGCAGCTTATGgcaacatgctaacatgctaacatgctaacccACCGGGAATGTTTACGGTTGAAAAAAACGGACACGGTAAAACAAAAAGACCCAGAAAAGATTCCTCTGCGAGCGAAGATCGGCCGCACGGCCTGATGGGAAACTGAGGAGGAAGTTAGTGAACTTTTGTGAGCAGTTTAACGGTTCACCTGTTGCCTCTGCTAGCTCTGCTGCTAGCCTGCTAACGGCTAACAGAGCTGCTGGCAGTTTGAAAAGTTTGCGAAGATAGAGACGCCGGGGATTAGACGGAGCCATAGGGCCGCCGGGGATTAGACGGAGCCCTAGAGAGGCCGGGGGTTAGACGGATCCATAGTGAGGCCGGCATTAGACGGAGCCATAGAGAGGCAGGGGTTTAGACGGAGCCGCAGAGAGGCCGGGAATTAGACGGAGCCCTGACGATGGAAGGAGTGAGACACTCCCCGGTTCTGTCCGCTCTGTTCGGGATGACTGAAGACTCCGAGACGCTGGGAGCCGCGCAGCTTATTAAAGAGCGTCTGTACTTTGCCACGCTGCGTAGTAAACCTAAGAGTACGGCCAACACTCACTACTTCTGCACCGATGATGAGTTCATCTATGAGAAtttctACTCAGACTTCGGTCCTCTGAACCTGGCCATGTTGTACCGATACTGCTGCAAACTCAACAAGAAGCTGAAGGTGAGTTTCTGCTGCTGACCCTCCTCTCACAGGAATGTCCAGAATGCAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74803 lncRNA upstream 24648 38353905 ~ 38355946 (+) False G55946
TU74832 lncRNA upstream 49651 38329663 ~ 38330943 (+) True G55967
TU74789 lncRNA upstream 112592 38254293 ~ 38268002 (+) True G55938
TU74778 lncRNA upstream 185742 38194387 ~ 38194852 (+) False G55932
TU74813 lncRNA downstream 34606 38427148 ~ 38430508 (+) False cxxc1a
TU74820 lncRNA downstream 39024 38431566 ~ 38437103 (+) True G55957
TU74815 lncRNA downstream 44877 38437419 ~ 38439409 (+) False cxxc1a
TU74814 lncRNA downstream 62784 38455326 ~ 38501868 (+) True G55951
TU74857 lncRNA downstream 70074 38462616 ~ 38495712 (+) True G55988
XM_039799294.1 mRNA upstream 2940 38362482 ~ 38377654 (+) True rtca
XM_039801731.1 mRNA upstream 78167 38273260 ~ 38302427 (+) True mecp2
XM_039800475.1 mRNA upstream 387577 37953744 ~ 37993017 (+) True srpk3
XM_039800788.1 mRNA upstream 438624 37743984 ~ 37941970 (+) True plxnb3
XM_039800474.1 mRNA upstream 647197 37716912 ~ 37733397 (+) True LOC120559052
XM_039800482.1 mRNA downstream 19520 38412062 ~ 38439413 (+) True cxxc1a
XM_039800963.1 mRNA downstream 48860 38441402 ~ 38473917 (+) True hdac6
XM_039800483.1 mRNA downstream 95967 38488509 ~ 38497459 (+) True lhfpl4b
XM_039800485.1 mRNA downstream 178614 38571156 ~ 38603728 (+) True irak1
XM_039801967.1 mRNA downstream 221661 38614203 ~ 38623939 (+) True LOC120559889
TU74758 other upstream 213594 38111171 ~ 38167000 (+) False G55919
TU74760 other upstream 213594 38111171 ~ 38167000 (+) False G55919
TU74653 other upstream 647318 37686769 ~ 37733276 (+) True G55842
TU74652 other upstream 664613 37686769 ~ 37715981 (+) False G55842
TU74631 other upstream 865223 37509624 ~ 37515371 (+) False G55835
TU74819 other downstream 43538 38436080 ~ 38437223 (+) True G55956
TU74811 other downstream 178639 38571181 ~ 38580336 (+) False irak1
TU74910 other downstream 412870 38805412 ~ 38936013 (+) False LOC120559064
TU74943 other downstream 467231 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 482285 38874827 ~ 38899283 (+) True G56033

Expression Profile