RNA id: TU74899


Basic Information

Item Value
RNA id TU74899
length 1905
lncRNA type sense_over
GC content 0.47
exon number 3
gene id LOC120559555
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 38693125 ~ 38815201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGGTTCGgtcgggttcggtcttaatttctattattttgctcgggctcgggccgggctcgggctcggGCTTCGGGTTGCcatggtaaatgagcggtcagctgatgcgtttcgCTTAGCGTGAAcatggatcctgaggaggtgaaacggaggctggtctctggaggacttggccggtttctttgttccaacttccaagtggcctctagcctccgttagtcatgaataaattatgttataaatgtataaatgactgacagacggccttttgtaggcctacagtcgggctgtaaacggtttcgggcttttaaaaagctgtctaTCAAAATGtgcttgtcgggctcgggccgagcTCTATCGGGCTCGGGGCCttttcgggccgtacttttaaggcccAATTACAGCTCTAATCTGGCCACTTTAACAGGAAATCAACTTTGGGGCCATTTAGAATGGATATGTTTACAACTGTGAAATGGTCTATGGAcaaacctgccagcaaaaagcgacgaaaaacagcgaagaaatggcccaaaactgcatagcgcccctttaaaatCTGACATACTACGTGGAAACGAGTTGACATGCCGTACAGACACAGACGTCTGTCCTTATTTCGTGCCCAGCAGGTGGAGAGGAACACATGGCACTCAGCCCGACTCACAACTTGCACAATTCAAAAAAAGCTGTTTTCTTCACCAAAATGACCACGTTTTTACCTCGGCTCTTACGGCACATTTATTATTGTATCGATAGCGCTTGTTTTCTACATCTGATCTGAAGTGTTCTTGCTCTCCCTGTAATGCCTTTTCCATTTCAAACATGTCCAGGCTGCTGTCACATGTCCATGTCCAGGTTGTTGTCACATGTCCATGTCCAGGTTGTTGTCACATGTCCATGTCCAGGTTGTTGTCATATATCCAGGCTGTTGTCACATGTCACATGTCCAGGTTGTTGTCACATGTCCATGTCCAGGTTGTTGTCATATATCCAGGCTGTTGTCATATGTCCAGGCTGTTGTCACATGTACAGGGTGCTGTCACATGTCACATGTCCATGTCCAGGTTGTTGTCACATGTACAGGTTTTTCATATTTTAGCCCTTTGGCTCTTCCGATGCCTCACAGATCTAAAGGCCTTCCTCTCGTTTGGTGTCCAACGAACACATGTGTGAAAGGTTGAGCTCATGATGCATCAGAGCGATAGAATATAGTCCATTTTGTTACCGAGTCGAACATCCAAAATGTCAGTTTgcggctggctggctggctggctggctggctgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcatggtTTCTCTATTCTCTGCGTACTTGATGTAAAAAGAAGAGAATCTGAATCAGACTGAAGTGCCTCCTTGTTCGCATGATTTACCGGAACAGACACCAGACTGTCCCTCTCTgtttgtttacacacacacctatacacacacacacatatatacacacacacacacagagacacacacacatacacacagacagatacacatacacagacagatacacgcacacacaacacacacacagacacacacacatacacacacccaaacacacacgcacacacacagatgcacagagacagatagatacacacacacacacacacacagagacacacacatatacacacccaaacacacaggcacacacatagatacacacactcacccacacacacagagacacagacacacacacacacgccaaaacacacaaacagatacacacacacagacacacaagcagatacacacacgtacacacacaccccagtTGAGTGTGAAGTGGAGACTGGTGGGATGTACAGAAGCGTGAAAGCCAAACCCACTGTGTCCTTCAAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74902 lncRNA upstream 50 38693125 ~ 38810780 (+) False LOC120559555
TU74897 lncRNA upstream 50 38807312 ~ 38810780 (+) True LOC120559555
TU74901 lncRNA upstream 50 38807312 ~ 38810780 (+) False LOC120559555
TU74926 lncRNA upstream 116926 38692088 ~ 38693904 (+) True G56018
TU74925 lncRNA upstream 117260 38691230 ~ 38693570 (+) True G56017
TU74922 lncRNA downstream 1435 38816636 ~ 38817548 (+) True G56014
TU74927 lncRNA downstream 2005 38817206 ~ 38856871 (+) True G56019
TU74937 lncRNA downstream 6058 38821259 ~ 38821970 (+) True G56029
TU74940 lncRNA downstream 11392 38826593 ~ 38828139 (+) True G56030
TU74950 lncRNA downstream 93654 38908855 ~ 38909200 (+) True G56036
XM_039800486.1 mRNA upstream 6502 38787321 ~ 38804328 (+) True LOC120559063
XM_039801383.1 mRNA upstream 138186 38628960 ~ 38672644 (+) True hcfc1b
XM_039801967.1 mRNA upstream 186891 38614203 ~ 38623939 (+) True LOC120559889
XM_039800485.1 mRNA upstream 207102 38571156 ~ 38603728 (+) True irak1
XM_039800483.1 mRNA upstream 313371 38488509 ~ 38497459 (+) True lhfpl4b
XM_039800487.1 mRNA downstream 28361 38843562 ~ 38937843 (+) True LOC120559064
XM_039800488.1 mRNA downstream 157209 38972410 ~ 39083390 (+) True LOC120559065
XM_039799996.1 mRNA downstream 281930 39097131 ~ 39114868 (+) True si:ch211-180f4.1
XM_039800001.1 mRNA downstream 317219 39132420 ~ 39186033 (+) True otud5a
XM_039800000.1 mRNA downstream 374882 39190083 ~ 39200407 (+) True pim2
TU74811 other upstream 230494 38571181 ~ 38580336 (+) False irak1
TU74819 other upstream 373607 38436080 ~ 38437223 (+) True G55956
TU74841 other upstream 418252 38380627 ~ 38392578 (+) True LOC120558454
TU74758 other upstream 643830 38111171 ~ 38167000 (+) False G55919
TU74943 other downstream 44572 38859773 ~ 38895663 (+) True G56032
TU74946 other downstream 59626 38874827 ~ 38899283 (+) True G56033
TU74949 other downstream 63815 38879016 ~ 38880382 (+) True G56035
TU74909 other downstream 71167 38886368 ~ 38936013 (+) False LOC120559064
TU74966 other downstream 198457 39013658 ~ 39028517 (+) False LOC120559065

Expression Profile