RNA id: TU75095


Basic Information

Item Value
RNA id TU75095
length 234
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G56103
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39427826 ~ 39615608 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaggtcttctggaagacttggagttcagcttttctttgagaaaagaacaaagaacggctctgaagtcattcttaaaaaaagggaagatgtgttcagagtttaaagttgaatctatcaactagcgttgctctgattggttggagcgctatcctattggtgcagagggaatttgaaagacaaacgttgatcccgcccctcggattgagccctgaccaatggggagttcccagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75065 lncRNA upstream 34929 39392388 ~ 39392897 (+) False G56094
TU75050 lncRNA upstream 110833 39315263 ~ 39316993 (+) True G56083
TU75051 lncRNA upstream 111567 39315263 ~ 39316259 (+) False G56083
TU75049 lncRNA upstream 123981 39303470 ~ 39303845 (+) True G56082
TU75028 lncRNA upstream 175312 39249055 ~ 39252514 (+) False G56072
TU75143 lncRNA downstream 41051 39656659 ~ 39957074 (+) False G56127
TU75148 lncRNA downstream 41051 39656659 ~ 39744108 (+) False G56127
TU75153 lncRNA downstream 41051 39656659 ~ 40011817 (+) False G56127
XR_005639176.1 lncRNA downstream 41058 39656666 ~ 39744170 (+) True LOC120558745
XR_005639177.1 lncRNA downstream 43150 39658758 ~ 39664179 (+) True LOC120558746
XM_039800155.1 mRNA upstream 114097 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 181790 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 190157 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 227419 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 241793 39132420 ~ 39186033 (+) True otud5a
XM_039799945.1 mRNA downstream 138931 39754539 ~ 39760147 (+) True LOC120558742
XM_039799942.1 mRNA downstream 193255 39808863 ~ 39811404 (+) True LOC120558738
XM_039799944.1 mRNA downstream 280357 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 290082 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 544399 40160007 ~ 40186156 (+) False ptpn18
TU75020 other upstream 157398 39249168 ~ 39270428 (+) True G56072
TU74991 other upstream 344330 39079180 ~ 39083496 (+) False LOC120559065
TU74966 other upstream 399309 39013658 ~ 39028517 (+) False LOC120559065
TU74909 other upstream 491813 38886368 ~ 38936013 (+) False LOC120559064
TU74949 other upstream 547444 38879016 ~ 38880382 (+) True G56035
TU75149 other downstream 193249 39808857 ~ 39918363 (+) True G56127
TU76202 other downstream 401377 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 486777 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 494850 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 840501 40456109 ~ 40457175 (+) True G56847

Expression Profile