RNA id: TU75123


Basic Information

Item Value
RNA id TU75123
length 369
lncRNA type intronic
GC content 0.50
exon number 2
gene id G56113
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39602161 ~ 39602553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtctctctgtctgtgtgtgtgtgtgtgtgtgtctctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctctgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtctgtgtgtgtgtctctctctgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75119 lncRNA upstream 37893 39531465 ~ 39564268 (+) False G56112
TU75111 lncRNA upstream 46174 39532668 ~ 39555987 (+) False G56112
TU75116 lncRNA upstream 56854 39532668 ~ 39545307 (+) False G56112
TU75109 lncRNA upstream 68525 39531153 ~ 39533636 (+) False G56112
TU75113 lncRNA upstream 68525 39531153 ~ 39533636 (+) False G56112
TU75134 lncRNA downstream 1760 39604313 ~ 39610210 (+) True G56123
TU75143 lncRNA downstream 54106 39656659 ~ 39957074 (+) False G56127
TU75148 lncRNA downstream 54106 39656659 ~ 39744108 (+) False G56127
TU75153 lncRNA downstream 54106 39656659 ~ 40011817 (+) False G56127
XR_005639176.1 lncRNA downstream 54113 39656666 ~ 39744170 (+) True LOC120558745
XM_039800155.1 mRNA upstream 288432 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 356125 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 364492 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 401754 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 416128 39132420 ~ 39186033 (+) True otud5a
XM_039799945.1 mRNA downstream 151986 39754539 ~ 39760147 (+) True LOC120558742
XM_039799942.1 mRNA downstream 206310 39808863 ~ 39811404 (+) True LOC120558738
XM_039799944.1 mRNA downstream 293412 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 303137 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 557454 40160007 ~ 40186156 (+) False ptpn18
TU75107 other upstream 37893 39531153 ~ 39564268 (+) False G56112
TU75120 other upstream 46174 39531153 ~ 39555987 (+) False G56112
TU75108 other upstream 46174 39531633 ~ 39555987 (+) True G56112
TU75121 other upstream 56854 39523146 ~ 39545307 (+) False G56112
TU75122 other upstream 56854 39531153 ~ 39545307 (+) False G56112
TU75149 other downstream 206304 39808857 ~ 39918363 (+) True G56127
TU76202 other downstream 414432 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 499832 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 507905 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 853556 40456109 ~ 40457175 (+) True G56847

Expression Profile