RNA id: TU75161



Basic Information


Item Value
RNA id TU75161
length 972
lncRNA type intronic
GC content 0.33
exon number 3
gene id G56133
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39690778 ~ 39742564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGTAGTATCAGTGTAGTAACAAGTTGTATCAGTGTAGTAACAAGTAGTATCAGTGTAGTAACAAGTAGTATCAGTATAGTAACAAGTAGTATCAGTATAGTAACAAGTAGTATCAGTGTAGTAACAAGTAGTATCAGTGTAGTAACAAGTAATATCAGTATAGTAACAAGTAGTATCTAAATACAAACTAATGATCTACATCCAATAACAGCAAGTTCAAAAATAAGAACATAACAGTATAATATCATCTTTATTTCTTGTTCAGTGTAGCACATGAGCACATAGATAACTTATTCTTGAGTGGCATCAATTATCAACATAACCCATGAAATAAAGCCTTTGTGACAAAATCAAATAACGTAATGATTTACTACAATATATTCATGTAAATctgacaaaaaactgaaaaaaagaaaatcgttTATTTGTTCTGTATAGTAAAATGTTAACTTACATTATGGAATATCTCCTTGGGCTTTATTAAAAAGCAACACTAGGTGGCAGTGTGAGAGTATGATTTGATGAGTGGAGCATGGAGGAACAGGCCTTACTAACCTACAGTATATAGCTCTACTTTAACAAATATAATTAGCTTTATTATCATTCACTCACATACTAAAAAGAGTTAATTGTGATTTTAGTTCTGTGAATGAAATAATTGTTTCAAATATTCTTCACTAGGAGCTTCTAGAAGGATCCTCTGTAGTTTTGCTGCCTGCATCACTCACTGTTTGAGCAATCCCagatttactttacttttaccaAAACCCCAACTACTATCGTACCGCCAGCATCTTTTACCAGATGCCACACTATATTTTTCTCCTCAGCTTTCTCTCTGGCCACACTTTCATGTCTGTTCTTTAactcttctttttcctctctcagtTCTTTGTCATACTGTTTCTTCATTTCATTAATCAGGGTTTGCATACTCCCTTTCTTTCTcgtctctgttctctctctgatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639177.1 lncRNA upstream 26599 39658758 ~ 39664179 (+) True LOC120558746
TU75095 lncRNA upstream 75170 39427826 ~ 39615608 (+) True G56103
TU75088 lncRNA upstream 76544 39559928 ~ 39614234 (+) True G56098
TU75134 lncRNA upstream 80568 39604313 ~ 39610210 (+) True G56123
TU75131 lncRNA upstream 86171 39599880 ~ 39604607 (+) True G56121
TU75166 lncRNA downstream 4561 39723782 ~ 39816290 (+) True G56136
TU75170 lncRNA downstream 27231 39746452 ~ 39764933 (+) False G56138
TU75169 lncRNA downstream 45084 39764305 ~ 39764933 (+) True G56138
TU76203 lncRNA downstream 307088 40026309 ~ 40026733 (+) True G56808
TU76208 lncRNA downstream 314400 40033621 ~ 40038323 (+) True G56811
XM_039800155.1 mRNA upstream 377049 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 444742 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 453109 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 490371 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 504745 39132420 ~ 39186033 (+) True otud5a
XM_039799945.1 mRNA downstream 35318 39754539 ~ 39760147 (+) True LOC120558742
XM_039799942.1 mRNA downstream 89642 39808863 ~ 39811404 (+) True LOC120558738
XM_039799944.1 mRNA downstream 176744 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 186469 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 440786 40160007 ~ 40186156 (+) False ptpn18
TU75107 other upstream 126510 39531153 ~ 39564268 (+) False G56112
TU75120 other upstream 134791 39531153 ~ 39555987 (+) False G56112
TU75108 other upstream 134791 39531633 ~ 39555987 (+) True G56112
TU75121 other upstream 145471 39523146 ~ 39545307 (+) False G56112
TU75122 other upstream 145471 39531153 ~ 39545307 (+) False G56112
TU75149 other downstream 89636 39808857 ~ 39918363 (+) True G56127
TU76202 other downstream 297764 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 383164 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 391237 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 736888 40456109 ~ 40457175 (+) True G56847

Expression Profile