RNA id: TU75166


Basic Information

Item Value
RNA id TU75166
length 333
lncRNA type read_through
GC content 0.30
exon number 3
gene id G56136
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39723782 ~ 39816290 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATACTACTTGTTACTACACTGATACAACTTGTTACTATACTGATACTACTTGTTACTATACTGATACTACTTGTTACTACACTGATACTACTTGTTACTATACTGATACTACTTGTTACTACACTGATACTACTTGTTACTATAACTGATACTACTTGTTACTATACTGATACTACTTGTTACTATACTGATACTACTTGTTACTACACTGATACTACTTGTTACTATACTGATACTACTTGTTACTACACTGATACTACTTGTTACTACACTGATACTACTTGTTACTATACTGATACTACTTGTTACTATACTGATACTACTTGTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75161 lncRNA upstream 4561 39690778 ~ 39719221 (+) True G56133
XR_005639177.1 lncRNA upstream 59603 39658758 ~ 39664179 (+) True LOC120558746
TU75088 lncRNA upstream 109548 39559928 ~ 39614234 (+) True G56098
TU76203 lncRNA downstream 210019 40026309 ~ 40026733 (+) True G56808
TU76208 lncRNA downstream 217331 40033621 ~ 40038323 (+) True G56811
TU76205 lncRNA downstream 222357 40038647 ~ 40044842 (+) True G56810
TU76206 lncRNA downstream 222357 40038647 ~ 40044842 (+) False G56810
TU76210 lncRNA downstream 227634 40043924 ~ 40044615 (+) True G56812
XM_039800155.1 mRNA upstream 410053 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 477746 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 486113 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 523375 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 537749 39132420 ~ 39186033 (+) True otud5a
XM_039799944.1 mRNA downstream 79675 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 89400 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 343717 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA downstream 343720 40160010 ~ 40186156 (+) True ptpn18
XM_039801763.1 mRNA downstream 613825 40430115 ~ 40451414 (+) True hm13
TU75107 other upstream 159514 39531153 ~ 39564268 (+) False G56112
TU75120 other upstream 167795 39531153 ~ 39555987 (+) False G56112
TU75108 other upstream 167795 39531633 ~ 39555987 (+) True G56112
TU75121 other upstream 178475 39523146 ~ 39545307 (+) False G56112
TU75122 other upstream 178475 39531153 ~ 39545307 (+) False G56112
TU76202 other downstream 200695 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 286095 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 294168 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 639819 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 1284304 41100594 ~ 41102972 (+) False LOC120559073

Expression Profile