RNA id: TU75170


Basic Information

Item Value
RNA id TU75170
length 354
lncRNA type read_through
GC content 0.49
exon number 3
gene id G56138
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 39746452 ~ 39764933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctcacacacacacacacacacacacacacaaacacacactcacacacacacacacaaacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacagacacacacacacagacacacacacagacacacacagacacacacacacagacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacagacacacacacacagacaaacacacacacagacacacacagagacacacacacacacacacacacagacacacacagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639176.1 lncRNA upstream 2282 39656666 ~ 39744170 (+) True LOC120558745
TU75148 lncRNA upstream 2344 39656659 ~ 39744108 (+) False G56127
TU75160 lncRNA upstream 3888 39692847 ~ 39742564 (+) False G56133
TU75161 lncRNA upstream 27231 39690778 ~ 39719221 (+) True G56133
XR_005639177.1 lncRNA upstream 82273 39658758 ~ 39664179 (+) True LOC120558746
TU76203 lncRNA downstream 261376 40026309 ~ 40026733 (+) True G56808
TU76208 lncRNA downstream 268688 40033621 ~ 40038323 (+) True G56811
TU76205 lncRNA downstream 273714 40038647 ~ 40044842 (+) True G56810
TU76206 lncRNA downstream 273714 40038647 ~ 40044842 (+) False G56810
TU76210 lncRNA downstream 278991 40043924 ~ 40044615 (+) True G56812
XM_039800155.1 mRNA upstream 432723 39282009 ~ 39313729 (+) True bcap31
XM_039799999.1 mRNA upstream 500416 39207730 ~ 39246036 (+) False slc35a2
XM_039799998.1 mRNA upstream 508783 39207730 ~ 39237669 (+) True slc35a2
XM_039800000.1 mRNA upstream 546045 39190083 ~ 39200407 (+) True pim2
XM_039800001.1 mRNA upstream 560419 39132420 ~ 39186033 (+) True otud5a
XM_039799942.1 mRNA downstream 43930 39808863 ~ 39811404 (+) True LOC120558738
XM_039799944.1 mRNA downstream 131032 39895965 ~ 39897486 (+) True LOC120558740
XM_039799447.1 mRNA downstream 140757 39905690 ~ 39918513 (+) True LOC120558439
XM_039799940.1 mRNA downstream 395074 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA downstream 395077 40160010 ~ 40186156 (+) True ptpn18
TU75107 other upstream 182184 39531153 ~ 39564268 (+) False G56112
TU75120 other upstream 190465 39531153 ~ 39555987 (+) False G56112
TU75108 other upstream 190465 39531633 ~ 39555987 (+) True G56112
TU75121 other upstream 201145 39523146 ~ 39545307 (+) False G56112
TU75122 other upstream 201145 39531153 ~ 39545307 (+) False G56112
TU75149 other downstream 43924 39808857 ~ 39918363 (+) True G56127
TU76202 other downstream 252052 40016985 ~ 40017315 (+) True G56807
TU76217 other downstream 337452 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 345525 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 691176 40456109 ~ 40457175 (+) True G56847

Expression Profile