RNA id: TU76205


Basic Information

Item Value
RNA id TU76205
length 2169
lncRNA type intronic
GC content 0.49
exon number 2
gene id G56810
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40038647 ~ 40044842 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctatctacagctagaggagaccccacctatctacagctagaggagaccccacctatctataGCTAGggccgtgataagacctatttcaccaaacggtggagtatccctttaagtacaGCAGAGAAAGCGTCTGTAGCCGACACGTTATAACCTCTGTGGTATCGGAAGCAAACCGTGACCAGCAGCTCCTCTCATGAAGCCGAGAGCCGAGATCAGAAAGGAGGCAACCACGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGGGCGCCCgggtagctcagctggtagagcgggcgcccatatatagaggtttagtcctcgacgcagcaggccgcgggttcgactccaacctgcggccctttgctgcctgTCATCCCCAGAAAAAGAAatgcagagccagaaccagaagaAGACTATTCCTTTCCTAACTTTCAATGATTTTACCAAATCTGTTCCGTTACCAGGTCTTCCGTGActactgtatttgtatttctgtctctgtctgccagCACTGTGAATGTCTTCAGGACAGACTGTCTGAACATGCGAGGAGTTATCTCTGCTGTGAGCTATCGCCACATTTAAACAATATCGGTATTTGAGCGTCCTCCGCCcactgctggtagttgccatggtaacgttagtaagctttaagtctcagagaacgagacgtcgtGACCAACGACACCCAATCAGGACGGAGAAACGCTGGCGTCTGTGATGCCAAAAGGTCTCCGTTTGGAGCCGTGGTGTTTctggtttaggggctcggaaacgccagagcagggggaatgagaggggagtgGTAAACGCCAgaacagggggaatgagaggggtaaacgccagagcagggggaatgagaggggtaaacgccagagcagggggaatgagaggggtaaacgccagagcagggggaatgagaggggtaaacgtagcagaagatattcctttttGAACGTAGCAgcgtataaatataaatgtagtcacattcttttaataactttttgtgTCGTGAGGTTCTGCAGATTCTACATGCAAAGTCTGGTGCAGCTCGGACCGAAAGGTCTCGTAGTAATAATGGGCATTCATCAGCTCAATTCAGGGAACGTGTGGATGTAAGGTTCTTGGATGTACGATGTACGCTATGGGAGTTATAGGGCAAAAGCCATTCTTATTTTTATAGCGCCCCCTGCAGGTGGATGTGTGTCATTTTTCCTTTCCCAGGAAGGTGAAACACTCTCTACCACCCCCCAGAGTTTCACCTGCATAGCTTGTACGGTGTAAGCTGCAGACACACTTTTATACACGGAAAATAAATGCACTCGACCAAAACCTCATTGGCGATCCAGGTCTTAGACAGAGCCCGGGGGGTATTTTGTATTGAAGCATTTTTTTTGTAGACAGGAAGCCCAGGAAGTAGCCACATCACAACAGAGTTACtgcacaaagaaaacaaaaacaaaaataatgcaGAGCATGTGTTTTCCAGGACATAGTCAGGACCCAACAGACAGACATTAGAATCAGGATTTACAGTCAGTTACAATCGAAATCATAAGTCTGTTACAATGTGTTTTTTCCAGGTCGTAGCCAGGACTCGGAGGAAGTGAGTGGTGCTGTCTAATTACAGTACAATCAATAGCAACATAAATGAACTGAGCCTGACTTTTCCATTCCCTCTGGTCCTTTAAAACTTACGGTTTCCTCTCTTCTTTAAGAAACAACAGACTCCAGCGTTTAGTCGTAGCCCAGCAAGCAGACTGGGAATGGAAGGTCTGAGGTTATGAACGCAGGGAATAGGACATGTTGTTTCCAGGTGTTAGTCTAGGCCCAGCAGGCACCTTTCAGCTTGAGGTGAACTAAAGGAGTGAGAAGGAAAGGAATGGACGGATGGATCCAGGCGATAGTCTCATCCCGATCCAGCTGCGCTGCCGCCAGGACTGCTCTCTTTACTGAGACGGACTAATTCCTGGGACAGAACCTCCAGgtccttctgCAGGTGCATGTTCTTGGTCAGCTGCTCCTCCAACATGTTCTGAAGCTTCTTGTTCATCTCTCGCAGGTTCTCGTCTCCTGGTTTTACCAGATCTCTGAGGACCGAGCCCAGACCTCCTCTGTCGCCCTGAGAGCCTCCGTGACCCCCGACAGCAGTGCCCGACACATct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76208 lncRNA upstream 324 40033621 ~ 40038323 (+) True G56811
TU76203 lncRNA upstream 11914 40026309 ~ 40026733 (+) True G56808
TU75166 lncRNA upstream 222357 39723782 ~ 39816290 (+) True G56136
TU75170 lncRNA upstream 273714 39746452 ~ 39764933 (+) False G56138
TU75169 lncRNA upstream 273714 39764305 ~ 39764933 (+) True G56138
TU76229 lncRNA downstream 85598 40130440 ~ 40267667 (+) False G56827
TU76235 lncRNA downstream 96033 40140875 ~ 40228441 (+) False G56827
TU76238 lncRNA downstream 96033 40140875 ~ 40267667 (+) True G56827
TU76240 lncRNA downstream 96033 40140875 ~ 40204179 (+) False G56827
TU76260 lncRNA downstream 111805 40156647 ~ 40314257 (+) False G56832
XM_039799447.1 mRNA upstream 120134 39905690 ~ 39918513 (+) True LOC120558439
XM_039799944.1 mRNA upstream 141161 39895965 ~ 39897486 (+) True LOC120558740
XM_039799942.1 mRNA upstream 227243 39808863 ~ 39811404 (+) True LOC120558738
XM_039799945.1 mRNA upstream 278500 39754539 ~ 39760147 (+) True LOC120558742
XM_039800155.1 mRNA upstream 724918 39282009 ~ 39313729 (+) True bcap31
XM_039799940.1 mRNA downstream 115165 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA downstream 115168 40160010 ~ 40186156 (+) True ptpn18
XM_039801763.1 mRNA downstream 385273 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA downstream 385275 40430117 ~ 40451414 (+) False hm13
XM_039801778.1 mRNA downstream 419709 40464551 ~ 40464926 (+) True LOC120559775
TU76202 other upstream 21332 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 120284 39808857 ~ 39918363 (+) True G56127
TU75120 other upstream 482660 39531153 ~ 39555987 (+) False G56112
TU76217 other downstream 57543 40102385 ~ 40148620 (+) True G56818
TU76220 other downstream 65616 40110458 ~ 40111288 (+) True G56819
TU76286 other downstream 411267 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 1055752 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 1076433 41121275 ~ 41129376 (+) True G56947

Expression Profile