RNA id: TU76298


Basic Information

Item Value
RNA id TU76298
length 404
lncRNA type read_through
GC content 0.58
exon number 3
gene id G56849
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40452947 ~ 40574799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctctgctctgctctgctctcttctcctctcctctccttttctctcttctcctctcctcctctcctcctcctcctctccctcctctcctctccctcctcttcctcctctccctcctctcctcttcctcccctcctctcttctctcctctccctccttttcctcctctccctcctctcttctctcctctccttcctctcttctctcctcttcctcctctccctcctcttcctcctctacctcctctccctcctcttcctcctctcttcttcctcctctacctcctcttcctcctctccctcctctcctcttcctctcctctccatcctcttCCTCCCGTCCTctacctcctcttcctcctccgtcctctcctctccctcctctcttctcctcttctcctctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76313 lncRNA upstream 61732 40390374 ~ 40391215 (+) True G56862
TU76303 lncRNA upstream 73667 40293712 ~ 40379280 (+) True G56853
TU76309 lncRNA upstream 82146 40370183 ~ 40370801 (+) True G56858
TU76239 lncRNA upstream 167569 40284770 ~ 40285378 (+) False G56827
TU76243 lncRNA upstream 185280 40264122 ~ 40267667 (+) False G56827
TU76345 lncRNA downstream 33765 40608564 ~ 40612303 (+) False G56886
TU76346 lncRNA downstream 35401 40610200 ~ 40612303 (+) True G56886
TU76351 lncRNA downstream 84704 40659503 ~ 40659763 (+) True G56891
TU76363 lncRNA downstream 110104 40684903 ~ 40774542 (+) False G56896
TU76360 lncRNA downstream 169165 40743964 ~ 40774542 (+) False G56896
XM_039801763.1 mRNA upstream 1533 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA upstream 1533 40430117 ~ 40451414 (+) False hm13
XM_039799938.1 mRNA upstream 34243 39417332 ~ 40418704 (+) True kcnd1
XM_039799940.1 mRNA upstream 266791 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA upstream 266791 40160010 ~ 40186156 (+) True ptpn18
XM_039801037.1 mRNA downstream 98232 40673031 ~ 40691622 (+) True LOC120559371
XM_039801039.1 mRNA downstream 130519 40705318 ~ 40710077 (+) True LOC120559372
XM_039800491.1 mRNA downstream 147853 40722652 ~ 40725794 (+) True LOC120559071
XM_039799518.1 mRNA downstream 161118 40735917 ~ 40744474 (+) True LOC120558500
XM_039799615.1 mRNA downstream 313611 40888410 ~ 40889879 (+) True LOC120558575
TU76217 other upstream 304327 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 341659 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 435632 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 534584 39808857 ~ 39918363 (+) True G56127
TU75108 other upstream 896960 39531633 ~ 39555987 (+) True G56112
TU76475 other downstream 525795 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 546476 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 1897121 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 2803547 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 2943151 43517950 ~ 43518074 (+) True LOC120559932

Expression Profile