RNA id: TU76309


Basic Information

Item Value
RNA id TU76309
length 217
lncRNA type intronic
GC content 0.50
exon number 2
gene id G56858
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40370183 ~ 40370801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacagacacacacagacacacacacacacagtcacacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagacacacacacacacacacacacacacagacagacacacacagacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76260 lncRNA upstream 55926 40156647 ~ 40314257 (+) False G56832
TU76255 lncRNA upstream 55926 40212694 ~ 40314257 (+) True G56832
TU76257 lncRNA upstream 55926 40212694 ~ 40314257 (+) False G56832
TU76258 lncRNA upstream 55926 40212694 ~ 40314257 (+) False G56832
TU76259 lncRNA upstream 55926 40212694 ~ 40314257 (+) False G56832
TU76291 lncRNA downstream 15527 40386328 ~ 40488120 (+) False G56847
TU76313 lncRNA downstream 19573 40390374 ~ 40391215 (+) True G56862
TU76293 lncRNA downstream 36308 40407109 ~ 40524538 (+) False G56848
TU76295 lncRNA downstream 36308 40407109 ~ 40524538 (+) False G56848
TU76298 lncRNA downstream 82146 40452947 ~ 40574799 (+) True G56849
XM_039799940.1 mRNA upstream 184027 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA upstream 184027 40160010 ~ 40186156 (+) True ptpn18
XM_039799447.1 mRNA upstream 451670 39905690 ~ 39918513 (+) True LOC120558439
XM_039799944.1 mRNA upstream 472697 39895965 ~ 39897486 (+) True LOC120558740
XM_039799942.1 mRNA upstream 558779 39808863 ~ 39811404 (+) True LOC120558738
XM_039801763.1 mRNA downstream 59314 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA downstream 59316 40430117 ~ 40451414 (+) False hm13
XM_039801778.1 mRNA downstream 93750 40464551 ~ 40464926 (+) True LOC120559775
XM_039801429.1 mRNA downstream 98482 40469283 ~ 40469564 (+) True LOC120559596
XM_039800489.1 mRNA downstream 126048 40496849 ~ 40515023 (+) True LOC120559068
TU76217 other upstream 221563 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 258895 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 352868 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 451820 39808857 ~ 39918363 (+) True G56127
TU75108 other upstream 814196 39531633 ~ 39555987 (+) True G56112
TU76286 other downstream 85308 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 729793 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 750474 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 2101119 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 3007545 43378346 ~ 43385991 (+) True zgc:113363

Expression Profile