RNA id: TU76313


Basic Information

Item Value
RNA id TU76313
length 450
lncRNA type intronic
GC content 0.50
exon number 2
gene id G56862
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40390374 ~ 40391215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccttacctaggtactgtcagggcacgcctcatactctgcttctgactggctagtagtccttacctagctactgtcagggcacgcctcatactctgcttctgactggctagtagtccttacctagctactgtcaggacacaccctcatactctgcttctgactggctagtagtccttacctagctactgtcaggacacgccctcatactctgcttctgactggctagtagtccttacctagctactgtcaggacacaccctcatactctgcttctgactggctagtagtccttacctaggtagtGAGCATGGGCTGATACACACTCACCAGTGTAAGGTCGGATGGTTGCGAGTAAATAAAGTCAAACTAAAATAGAGACGAGTCTGGAGctgcagtctgtctctctctgtctgtctctgtctgtctgtctgtctctctctctctgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76303 lncRNA upstream 11094 40293712 ~ 40379280 (+) True G56853
TU76309 lncRNA upstream 19573 40370183 ~ 40370801 (+) True G56858
TU76234 lncRNA upstream 104996 40264122 ~ 40285378 (+) False G56827
TU76239 lncRNA upstream 104996 40284770 ~ 40285378 (+) False G56827
TU76243 lncRNA upstream 122707 40264122 ~ 40267667 (+) False G56827
TU76293 lncRNA downstream 15894 40407109 ~ 40524538 (+) False G56848
TU76295 lncRNA downstream 15894 40407109 ~ 40524538 (+) False G56848
TU76298 lncRNA downstream 61732 40452947 ~ 40574799 (+) True G56849
TU76325 lncRNA downstream 101934 40493149 ~ 40535009 (+) True G56871
XR_005639241.1 lncRNA downstream 116482 40507697 ~ 40510459 (+) True LOC120559366
XM_039799940.1 mRNA upstream 204218 40160007 ~ 40186156 (+) False ptpn18
XM_039799941.1 mRNA upstream 204218 40160010 ~ 40186156 (+) True ptpn18
XM_039799447.1 mRNA upstream 471861 39905690 ~ 39918513 (+) True LOC120558439
XM_039799944.1 mRNA upstream 492888 39895965 ~ 39897486 (+) True LOC120558740
XM_039799942.1 mRNA upstream 578970 39808863 ~ 39811404 (+) True LOC120558738
XM_039801763.1 mRNA downstream 38900 40430115 ~ 40451414 (+) True hm13
XM_039801764.1 mRNA downstream 38902 40430117 ~ 40451414 (+) False hm13
XM_039801778.1 mRNA downstream 73336 40464551 ~ 40464926 (+) True LOC120559775
XM_039801429.1 mRNA downstream 78068 40469283 ~ 40469564 (+) True LOC120559596
XM_039800489.1 mRNA downstream 105634 40496849 ~ 40515023 (+) True LOC120559068
TU76217 other upstream 241754 40102385 ~ 40148620 (+) True G56818
TU76220 other upstream 279086 40110458 ~ 40111288 (+) True G56819
TU76202 other upstream 373059 40016985 ~ 40017315 (+) True G56807
TU75149 other upstream 472011 39808857 ~ 39918363 (+) True G56127
TU75108 other upstream 834387 39531633 ~ 39555987 (+) True G56112
TU76286 other downstream 64894 40456109 ~ 40457175 (+) True G56847
TU76475 other downstream 709379 41100594 ~ 41102972 (+) False LOC120559073
TU76436 other downstream 730060 41121275 ~ 41129376 (+) True G56947
TU77125 other downstream 2080705 42471920 ~ 42473941 (+) False LOC120558567
TU77616 other downstream 2987131 43378346 ~ 43385991 (+) True zgc:113363

Expression Profile