RNA id: XR_005639146.1


Basic Information

Item Value
RNA id XR_005639146.1
length 386
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id LOC120558567
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 42471896 ~ 42473941 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTGTCTGGGTGTCTGCAGGATGGAGATTTGGACACCACCCAGGTGTTCCTGCAGGCCTCGGACTCCAAACATCTGGAGAAGAAGCCGGGCCGCAGGAAGAGGACCTGGCTGGGACTGGGTCTGGTGCTGGGGGCCGGGGCCGTGGCTCTGCTCACCGGGATGCTCGTCTGGCACTTTCACTTACGCAGTGATGTCCGAGTGAAGAAACTGTACATCGGCCAGATGGGGATCAATAACCAGCGCTACCAGGCGGCGTATGAAGATCCCAGCAGCTCCGAGTTCAGCCAGCTGGCAGGGCTGGTCAGCACGCAGCTGAAACTGATTTACTCCAAGAACTCTGTGCTGGCCAAATCCTTTAAAGGCTCCACGGTCCACGCCTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77119 lncRNA upstream 31025 42440532 ~ 42440871 (+) False LOC120558563
XR_005639142.1 lncRNA upstream 39751 42430089 ~ 42432145 (+) True LOC120558565
XR_005639143.1 lncRNA upstream 39751 42430089 ~ 42432145 (+) False LOC120558565
TU77059 lncRNA upstream 185941 42225347 ~ 42285955 (+) True G57385
TU77058 lncRNA upstream 185941 42283670 ~ 42285955 (+) False G57385
TU77127 lncRNA downstream 12805 42486746 ~ 42546095 (+) True G57433
TU77182 lncRNA downstream 120662 42594603 ~ 42680073 (+) False G57438
TU77185 lncRNA downstream 122827 42596768 ~ 42680073 (+) False G57438
TU77137 lncRNA downstream 141045 42614986 ~ 42616037 (+) True G57437
TU77159 lncRNA downstream 141045 42614986 ~ 42616037 (+) False G57437
XM_039799612.1 mRNA upstream 30997 42440002 ~ 42440899 (+) True LOC120558563
XM_039799610.1 mRNA upstream 58250 42412119 ~ 42413646 (+) True LOC120558561
XM_039800506.1 mRNA upstream 60502 42404822 ~ 42411394 (+) True LOC120559084
XM_039799609.1 mRNA upstream 437133 42027772 ~ 42034763 (+) True LOC120558560
XM_039799605.1 mRNA upstream 523369 41945023 ~ 41948527 (+) True LOC120558558
XM_039799602.1 mRNA downstream 88705 42562646 ~ 42575410 (+) True LOC120558555
XM_039799598.1 mRNA downstream 132099 42606040 ~ 42613341 (+) True snx21
XM_039801869.1 mRNA downstream 710019 43183960 ~ 43202129 (+) True LOC120559837
XM_039799456.1 mRNA downstream 872688 43346629 ~ 43353622 (+) True LOC120558444
XM_039799457.1 mRNA downstream 872688 43346629 ~ 43352025 (+) False LOC120558444
TU76436 other upstream 1342520 41121275 ~ 41129376 (+) True G56947
TU76475 other upstream 1368924 41100594 ~ 41102972 (+) False LOC120559073
TU76286 other upstream 2014721 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 2323276 40102385 ~ 40148620 (+) True G56818
TU77616 other downstream 904405 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 1044009 43517950 ~ 43518074 (+) True LOC120559932
TU77790 other downstream 1478617 43952558 ~ 43952942 (+) False LOC120559089
XR_005639290.1 other downstream 1508061 43982002 ~ 43984512 (+) False LOC120559493
TU77798 other downstream 1544258 44018199 ~ 44027129 (+) False G57886

Expression Profile