RNA id: TU77137


Basic Information

Item Value
RNA id TU77137
length 981
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G57437
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 42614986 ~ 42690384 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgattaatgaagacactaagaaccctttaggaccaggcgcccggcgcacggagcCTTTTTACGGCCGTCAGActagcagaagaggatttggCTTCACACAGAGAAACTTAGATCTGTAAATAACAGATGATTAATctgtggggcggcctctagctcccccagtgagagcgtgcgccccatataggctgagtcctttgctgcgtgtcatcccccctctctccccccacttccctgtctatccactgtcactatctaataaagggaaaagccccaaacaAGCTTATTAATATGCATGAGGTAAGACTACAGGTGGGTTTGTTGGgggagttttttgttttttattttggcgGGGGTTTTGGGAGATGagtttttttgcgttttttgtcaattatttcaacatttgtcactttttgtaaaGATATTTGTtccaaaatgtgaatgttttcttcttattttttttatttccgttGACATTTAAACACTTAAGTTGATATAGTTTGAAATGCGTGTGAGCTGTGGTAAACCGTGGAGACGCCCCAGGGCTGGATTATTCCTCCAGCTCTCCGGAAGATTAGAAGGATTCCTGTAGTTTGGAGACTCAGACCTCTGAGCTGCTGCGGGTTTCACAACCTTGAGTAACTCTGAatgttattataatatataatatattatattatataatatataatatgttaTTCTGACTAAAGGGTTACCTGCTCACACCATACATGATTATTGTTTTGAGGGACTTTGGTGTGTCTTCATATTAGAAACAGATTTCAAAATGATCTACAGAGTTTCTCTGAgtcgtctctctgtctgtctgtctgtctctctgtcggtctgtctgtctctccctctgtccgtttgtctgtctgtctctccctctgtccgtctgtgtaaatatttttctaTGTGGATTCAGCAGAACTGCTTCAGAGTGATGTATAAAAGTAtattttcaaatatatattttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77127 lncRNA upstream 68891 42486746 ~ 42546095 (+) True G57433
XR_005639146.1 lncRNA upstream 141045 42471896 ~ 42473941 (+) True LOC120558567
TU77119 lncRNA upstream 174115 42440532 ~ 42440871 (+) False LOC120558563
XR_005639142.1 lncRNA upstream 182841 42430089 ~ 42432145 (+) True LOC120558565
XR_005639143.1 lncRNA upstream 182841 42430089 ~ 42432145 (+) False LOC120558565
TU77171 lncRNA downstream 4897 42620934 ~ 42629165 (+) False G57437
TU77189 lncRNA downstream 6790 42622827 ~ 42623298 (+) True G57440
TU77157 lncRNA downstream 7352 42623389 ~ 42629165 (+) False G57437
TU77165 lncRNA downstream 7957 42623994 ~ 42690384 (+) False G57437
TU77166 lncRNA downstream 7957 42623994 ~ 42624904 (+) False G57437
XM_039799598.1 mRNA upstream 1645 42606040 ~ 42613341 (+) True snx21
XM_039799602.1 mRNA upstream 39576 42562646 ~ 42575410 (+) True LOC120558555
XM_039799612.1 mRNA upstream 174087 42440002 ~ 42440899 (+) True LOC120558563
XM_039799610.1 mRNA upstream 201340 42412119 ~ 42413646 (+) True LOC120558561
XM_039800506.1 mRNA upstream 203592 42404822 ~ 42411394 (+) True LOC120559084
XM_039801869.1 mRNA downstream 567923 43183960 ~ 43202129 (+) True LOC120559837
XM_039799456.1 mRNA downstream 730592 43346629 ~ 43353622 (+) True LOC120558444
XM_039799457.1 mRNA downstream 730592 43346629 ~ 43352025 (+) False LOC120558444
XM_039799462.1 mRNA downstream 765728 43381765 ~ 43385754 (+) False zgc:113363
XM_039801173.1 mRNA downstream 866885 43482922 ~ 43520837 (+) True ndnl2
TU77125 other upstream 141045 42471920 ~ 42473941 (+) False LOC120558567
TU76436 other upstream 1485610 41121275 ~ 41129376 (+) True G56947
TU76475 other upstream 1512014 41100594 ~ 41102972 (+) False LOC120559073
TU76286 other upstream 2157811 40456109 ~ 40457175 (+) True G56847
TU76220 other upstream 2503698 40110458 ~ 40111288 (+) True G56819
TU77616 other downstream 762309 43378346 ~ 43385991 (+) True zgc:113363
XR_005639387.1 other downstream 901913 43517950 ~ 43518074 (+) True LOC120559932
TU77790 other downstream 1336521 43952558 ~ 43952942 (+) False LOC120559089
XR_005639290.1 other downstream 1365965 43982002 ~ 43984512 (+) False LOC120559493
TU77798 other downstream 1402162 44018199 ~ 44027129 (+) False G57886

Expression Profile