RNA id: TU77616


Basic Information

Item Value
RNA id TU77616
length 1175
RNA type TUCP
GC content 0.54
exon number 3
gene id zgc:113363
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 43378346 ~ 43385991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGCCCAAGGGTATTCTACTTCTCTGTACCTGAATCTGACATCAGTCTCGGTCTGATGTCACCTCTGATGTCACCTCTGATGTCACTTCTCAGGTGTGGACAGCTCATCAGTGTCTCCTCCTCCCATCTGTACTCCTCCATCTTCCTCcttcacctctcctcctcctcctcctgcgtcTCCTCCTCCGTCTCGGGGGTCCGCCTGTAACAGACCCAACTGcagccttcctcctcctcatcatcaccatcatcctCGCCATGATCAGCGTCGGCACAGCACCAATCAGAAGCGTCTCTCCTCCACTAGAAGCCACGCCTCCGTTAAGACGGACGCCGACCACATTAAGGAGGTGGCTGGAGACGACTGTTGCGTTCACTGTCTCCTGGCCTGCCTGTTCTGCGAGCTGCTGTCCATGTGTTCGGCCCTGGGGGAGTGTCTGGTGTGTGGAGTGGGCGGAGCCGGCTGTTGCGACTCGGcggcaggctgctgctgctgcgtggAGGCAGCGGGGGAGGCGGCCTGTACGGAGGAGGCGTGTCAGGCCGTGTTGGATTGTGGGATACTCGAGGACTGCTGCGGCTCGTCCGACTGCCTGGAGGTCTGTCTGGAGTGCTGCTCCATCTGCTTCCCCTCGTAGAGCGGCCAATCAGAGACGGACTACAAGATGATGTCAAGAGtagtgactttttttcactGGAGACTTTACTGCTTCATCctggaaaaacagaaagatgAAATCTTTCTTTCTTAGTTTTTCCATTTACCAGATTGAATGAACAAAGGACACACAGGGTCCTATATCTCGTACCGGGCGCAGCGCACTAAGggcctattttaacgatctgaggtcacggtgtgaagcgcccggcgcaggtgtgtttagggcgtgtccaaatccacttctaCTAGTCTGACGGTGGtaaaaagggtccgtgtgccgggcgcctggtcctaaagggttgttcttagtgtgttcattaatcagaggtgtgttttgggcgtaacatgcaatcaaccaatcagagatcatctcccattccctttaaaagccaggctcgtttggaccttggagcattgctgttatgatggaggatttgcaccgtaatatttttatttgtaatcttctgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639335.1 lncRNA upstream 78562 43298847 ~ 43299784 (+) True LOC120559613
TU77591 lncRNA upstream 89745 43287841 ~ 43288601 (+) True G57722
XR_005639333.1 lncRNA upstream 91898 43282839 ~ 43286448 (+) True LOC120559611
TU77590 lncRNA upstream 91907 43282922 ~ 43286439 (+) False LOC120559611
TU77589 lncRNA upstream 97343 43280794 ~ 43281003 (+) True G57720
TU77621 lncRNA downstream 70 43386061 ~ 43391036 (+) True G57738
TU77628 lncRNA downstream 10193 43396184 ~ 43420499 (+) True G57741
TU77632 lncRNA downstream 23076 43409067 ~ 43411504 (+) True G57744
TU77669 lncRNA downstream 93226 43479217 ~ 43480285 (+) True G57776
TU77674 lncRNA downstream 166209 43552200 ~ 43627435 (+) True G57780
XM_039799456.1 mRNA upstream 24724 43346629 ~ 43353622 (+) True LOC120558444
XM_039799457.1 mRNA upstream 26321 43346629 ~ 43352025 (+) False LOC120558444
XM_039801869.1 mRNA upstream 176217 43183960 ~ 43202129 (+) True LOC120559837
XM_039799598.1 mRNA upstream 765005 42606040 ~ 42613341 (+) True snx21
XM_039799602.1 mRNA upstream 802936 42562646 ~ 42575410 (+) True LOC120558555
XM_039801173.1 mRNA downstream 96931 43482922 ~ 43520837 (+) True ndnl2
XM_039800512.1 mRNA downstream 454856 43840847 ~ 43953510 (+) True LOC120559089
XM_039800513.1 mRNA downstream 578482 43964473 ~ 43972153 (+) True LOC120559090
XM_039801213.1 mRNA downstream 588033 43974024 ~ 43989203 (+) True LOC120559495
XM_039801212.1 mRNA downstream 596011 43982002 ~ 43984512 (+) True LOC120559493
TU77125 other upstream 904405 42471920 ~ 42473941 (+) False LOC120558567
TU76436 other upstream 2248970 41121275 ~ 41129376 (+) True G56947
TU76475 other upstream 2275374 41100594 ~ 41102972 (+) False LOC120559073
TU76286 other upstream 2921171 40456109 ~ 40457175 (+) True G56847
TU76217 other upstream 3229726 40102385 ~ 40148620 (+) True G56818
XR_005639387.1 other downstream 131959 43517950 ~ 43518074 (+) True LOC120559932
TU77790 other downstream 566567 43952558 ~ 43952942 (+) False LOC120559089
XR_005639290.1 other downstream 596011 43982002 ~ 43984512 (+) False LOC120559493
TU77798 other downstream 632208 44018199 ~ 44027129 (+) False G57886
TU77812 other downstream 632208 44018199 ~ 44027055 (+) True G57886

Expression Profile