RNA id: XM_039799275.1


Basic Information

Item Value
RNA id XM_039799275.1
length 5323
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC120558336
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17209216 ~ 17240743 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAACATGTCAGCAAGGGTAGCGTTTGGAAAGGGGCGCCTCACTCCCAAGAAGCTGTCCTTTGCTTTCCCTCAGACAGATTCCCTGAGGAAAGGCAGCCGGTCTGCAGGAGGAAAGCGGAGGATGTTCTCGTTTTCTCTCAGATGTCGACTGGGCATCATCAGAGGGGGAACCAAAGATGAAGGACCATACTCAAAGGGGAGCAAGGAGTACGGGGCATCTGACCAATCACATTCATCCTGCAGGCGCAGCTTCTCAGCAGAGGAGTACCGAGGAGTGACCACGGTAGACCTGATGAAAAGGGAAGGCAGCAGCCTTGGCCTCACCATCTCCGGAGGCTCTGATAAGGATGGCAAGCCCAGAGTGTCAAACCTACGGCCAGGTGGGCTAGCTGCCAGGAGTGACCAGCTGAATGTAGGAGACTACATCAAGTCAGTGAATGGCATCAACCTGTCAAAGCTTCGCCACGATGAGATCATCAGCCTGCTGAAGAACATCGGGGAGCGAGTTGTGCTGGAGGTGGAGTACGAGCTGCCTCAATTTGTCCAGAACCCCTCAGGAGTCTTAACCAAAACCATGGAGGTGTGTTTACACAAGGAGGGAAACAGCTTTGGGTTTGTAATGAGAGGAGGCTTCCACGAGGACTGGCGCAGGTCTCGTCCTCTGGTGGTTACATATATCAGGCCCGGAGGTCCCGCTGACAGAGAGGGGACTTTGAAGGCCGGAGACCGAGTGTTGAGCGTAGACGGGATGCCTTTAAACCGAGAGAAGCACGCTGACGCTTTGACCATGCTGATGCAGAGCGGCCAGGAAGCTCTCTTCCTGATTGAGTATGACGTCTCCGTCATGGAGGCAGTGCAGCAAGCCTCGGGCCCTCTGCTGGTGGAGATAGTGAAAGGTCCCTCCGCCAGCCTCGGGATCAGCCTCACTACAACAATATACAGGAGCAAAcaagttattattattgacaAGATAAAGGCAGCCAGCGTGGTGGAAAGaTGTGGAGCGCTGCATGCAGGTGACATCCTTCTGTCTATAGATGGGACCAGCACAGAGCACTGCTCTCTGATGGAGGCCACGCAGCTACTTGCTAACACTTGTGATGTTGTGAAACTGGAGATTCTCCCAGCCAGTCAGAGCAGACTTCCTGTCAGGCCGCAAGACACAGTTAAAGTGCAGAAGAGCAACCATCATCACTGGGACCAAAGCAGCAACTACTGCCATCCCCCACATGCCAGCCACGGCAAGACATGGAGCAGCCCAAGCCACCCACACAACCAGCAGGACCACTGCAAATCTCTGGTGAGCGGTGGCTTCTCCCCTTCCTCCACAGCCACCTCAGGCTTTAGCAGCCAGGGTAGCAACACGCTGCCCTGTCCCATCCCTCCGATAGCTCCCACCAGCCCCCGCAGCTTGACAGGCAAGAGGAGGAACAGGAAGAAGGACCATAAGAGCTCACTTTCTCTGGCGTCCAGTTCTGTCGGCCCAGGGGGGCAGGTTTTTCATGTGGAAACAAGCGAGGTCATCCTGAGGGGGGATCCACTCACAGGTTTTGGGATCCAGCTGCAGGGGGGTGTCTTTGCCACAGAAACCCTGTCTGCTCCCCCAGTCATCCGCTTTATTGAGCCCGACAGCCCAGCTGAGAGGTGTGGGCTGCTGCAGGTTGGGGACAGACTGTTGTCCATTAATGGGATCCCGACTGAAGATGGCACTTTGGAGGAAGCCCATCAGCTGCTCAGAGACTCTGCTCTGGCCAACAAGGTCACAGTGGAGATTGAGTTTGACGTTGCAGAGTCAGTGGTTCCCAGCAGTGGCACCTTCCACGTTAAACTACCCAAGAGGAGAGGAGTGGAGCTGGGCATCACCATCAGTGCAAGTAAGAAACCTGGCAAGCCCCTCATCATCTCGGACATCAGAAAAGGAAGCATAGCACACAGAACAGGCACTCTGGAGCCTGGAGACCGGCTACTGGCCATCGACAGTGTGCGTCTGGAGAACTGCACCATGGAGGACGCCATGCATGTCCTGCAGCAGGCCGAGGACATGGTCAAACTCCGAATCCAGAAAGATGAGGACAACATTGATGAGTTGGAGATGTCAGGCTCTATAATCTACACAGTTGAGCTGAAGCGATATAACGGACCACTGGGCATCACGATCTCTGGCACAGAGGAGCCCTTTGACCCCATCGTCATTTCTGGCCTCACTAAGAAAGGCCTGGCAGAGAGGACCGGGGCCATTCATATAGGGGACCGTGTCCTGGCCATCAACGGAGTCAGTCTGAAAGGAAAGCCACTGAGCGAGGCCATCCATCTTCTGCAGATGGCTGGGGAGTCCGTCACcctcaagataaaaaaaaaggctgaccAATCTGATGGCCGACGGCCTCTGGACAGAGAAGCTGGGTTTTTAAGTGACACAGAGGATGACCTGACAGACTCCCAGAAGACCAGTAAACACTCGGAGGTCTACTCAGCCACTCTGCCCAGTATAGACTCTGCAATGAGCTCCTGGGATAGCTCAGGGTTTGACGCAGGCTACGGTAGCCAAGggaCATATCTTCACAAAGCATCCGATATATTGCTCAATCCAAATGAGTGGCGACGCACAAAGCACAGGAGCCAAACCAGTTCCAGCTCTGCAGGCCTAGTCCACCACGCAGCGCTGTATGATGGGAGGTTCACTGAGGATGAGTGGGACAAGATGCCTGGATTCGTCAGCCCCCCTCGTTGCCATGGCACCTTGAACCAGGAAAACAGCCTCTGGTCCCAGGCTCTGCAGGACCTCGAGACCTGTGGCCAGTCAGAGATTCTCAGGGAGCTGGAGgcATCCATGACAGGTAGCGCTCTCAGTCTGTACctagaggaaaccaagaccaaCGACGACTCAATGTTTAATTCTGAAATTAGTCCCATTAAGAGGGAGGGGATGCACGGCGAGCCTAGGAACAAAAGCAACCTGAACATGTCGACTGGAGCCAGAGACGTACCATCCCAGGGGAGAGGAGACCCCTCTGATATTTTGTCCCCTATCACTCTGGCACTGCACAAGGTGACTGTGAGGAGGGACCTTGAGAGCCATGACTTTGGTTTCAGTGTATCAGACGGGCTCCTGGAGAAAGGGGTTTATGTCAACATGATCCGCCCCGATGGCCCTGCTGACCAGGCAGGGTTAAAACCTTTCGACCGCATTCTTCAGGTGAACCGTGTGAGGACCAGGGACTTGGACTGTTGTCTAACTGTGCCCCTAATTATAGAGGCTGGAGACAGCCTGGACTTGGTCATTAGTAGGAATCCACTGGCAGCGGCAGACACTGGGCTGCCCGACGACTGTGACGACCCCTCAAACTCACTGTTCTGCTTTCCCGAGCACAGGACCAACAGCATCGCTCTGTGACCACAAAGATAGACTCTAGCTTTTTGAAACACTGGGACCACATGTATGTTGCGCACGGTTACGTTTGTCACATAGTACCTCACAGACAGACCTTCACACTCACGCATAACATCCTCACAGGAACAGCCACTCTCATCGCACAAAGTGCACGTGTTCACTACTGCCGGTTTTAGTCACTGTGTTCACATGATGCAGTTCAGAGGAGGCTCTGGCTTCAGGACAATcccctcccctttcctctcCAGCGGCAAAGCCACATGCGGAGTTATATAACAGGGGGAGTCATAGCTTCTGACTGAGCCAGGATGTCAACACACGCCTCAGCTCTGGAGAGAGTCAAATGCTGCACATACACGCACTGGTACATTTCCCATCTTTGCTCTAATGAGTTTCATGTTACAAGTGAAAGCACATTTTCCAcaatctttcttttcttttttacatgcatataaaacacaaacacatacactgaAAAGCAGGGTGTCCGTGGACTCAAGGTCCAAAGGCCCATTGTGTTTATTTGAGTTATTTCAGCTACGACTTGGCTCACTGCCCACGTTTCCAGTCTTTCCTTCTCACTGCCCGCCCTAGAGAACGGACAGTGCCTCCAAATAGACAGAATGCTCTCTAATACTTTCCATGTATCATTAGCTGAATTTGAATGCCCCTTACATCTTGATACCAGGAATTCTTGTGAAGACACTCTACCCTTTCTGAATGGTTCCAGAGAGACTCCAGTTTTCAGAGATATATAATGTtgcaatatgtttgttttttttgtccctgTCTTGATGACTCAGCCACATGtttacaaatatatttttagtttCACACTCTgcacacgtttttttttctaacactGCATTTGCACATAACGCacattttatgatttatttgTTAACAATGCCGTTtcacttttttcccctttcacTGAATCTGCATCTCTGTATGTGGCATTACACCAGGATGACTTATGGGTTGGTTTGTGGTCCATCACTGATACttccttaaagcaacactatgtaagtTACCCTCTTcggtctcattggaactacagctcgcgcggctgtagttccaatgagacaacctgtagggggcccgaagagggaaagttgcatagtgttgctttaagtgaATTACATCCTTTCCCAAACAGGAGGATCAAATGCCTTTGCAATTTTCAGTGATGATGaatgattttgttgttttcattcaacatctGACTGGATTGATGTTCTCCTCTGCAGTAGTGGTGTTTCCTACCGATATCTATAAGCATGTAAGGTATGCATTGGGTTTGTCATGCAAGTACCTCTTCCTTATAATAAAACAGTATTGATTCATCTCTGTTTGCTCCAACTTTGATCTTTGCGACAGGGTCCCCCTTTTTATCATGACTACGTGTTTTTATAAAGCTTTTGTGTAACAAATTTGACCTGCTGATCCAGCTGCCTCTCTGGAAATAAGAAATGTTGGTTTCATGTGTTGGCTGATATAAAGATGTTGTGAGATAGTTGCACTGTCCCGTTTAGAGCAGACTGATTCATCCTTGGGGCGTTaacttttttaaaatctgatttcaGACATGTCTTGCATAAATGTTATGTTGTATACAGAGGCCTATTTTTAAGgttttatattaatttattgtattgtatcttttattttgcTGTACAATGTATCATGGGTATgcagtgcttttatttttatttacagtatatgcacatacagtatattatcttTCTGTAAGCTGTGATACTGAATGTGGCTGCTCATTGGTTAATTTCCGCATCCTCCCTGAATATGTCTGGAATCGTTTCAAAGGAAATGGAAAGATTTATTGgatatgattttatttttgttatttattattaactaaaacatttctttttacaagaataaagttCATGAAACCATAGTTGATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67617 lncRNA downstream 3587 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 15581 17190077 ~ 17193635 (-) True G50567
TU67603 lncRNA downstream 55789 17152200 ~ 17153427 (-) True G50553
TU67638 lncRNA upstream 10155 17250650 ~ 17251274 (-) True G50574
TU67718 lncRNA upstream 229712 17470207 ~ 17470675 (-) True G50647
TU67797 lncRNA upstream 442553 17683048 ~ 17683519 (-) True G50709
TU67884 lncRNA upstream 542193 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 734260 17974755 ~ 17991671 (-) False samd10b
XM_039801477.1 mRNA downstream 47168 17158804 ~ 17162048 (-) True LOC120559621
XM_039801877.1 mRNA downstream 51666 17153488 ~ 17157550 (-) True si:ch73-233m11.2
XM_039800940.1 mRNA downstream 67272 17130282 ~ 17141944 (-) True slmapb
XM_039800941.1 mRNA downstream 67273 17130282 ~ 17141943 (-) False slmapb
XM_039800975.1 mRNA downstream 84929 17119666 ~ 17124287 (-) True abhd6b
XM_039799285.1 mRNA upstream 2385 17242880 ~ 17246203 (-) True rpl32
XM_039801397.1 mRNA upstream 84712 17325207 ~ 17358698 (-) True LOC120559574
XM_039800744.1 mRNA upstream 164607 17405102 ~ 17520570 (-) False LOC120559199
XM_039800745.1 mRNA upstream 164607 17405102 ~ 17502486 (-) False LOC120559199
XM_039800742.1 mRNA upstream 164607 17405102 ~ 17482058 (-) True LOC120559199
TU67071 other downstream 925360 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2355399 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2355399 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 2674611 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3063994 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 447620 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 599049 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1639870 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2459278 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2460835 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile