RNA id: XM_039799328.1


Basic Information

Item Value
RNA id XM_039799328.1
length 2608
RNA type mRNA
GC content 0.52
exon number 12
gene id src
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8746967 ~ 8788376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTTTTTTTTGTCGGGATTTGGTgttccttcctcctccacagGCTGTCTGTCTGGGGGAAAAGCTAGCTTAACTTGTGTGATTAAAGGGGCAAACCAGGCATTCTGCTTTTAACTTGAATGTAATTGATGTTTTGATGTGAATGAAAGATGTTTTCTTCAGCCTCGGAGTCATTCCCCGTCATGACCTCACCGGACCGCCCCTCCAGTTGAATGGGATTCCTCATCGCCTCCCTAGCTGTCGCTTGTTTGGGCACCGACTGTCTCtgctgccgccgccgccgccgcaaCAGGCCCCCGGTTGTTAGGATCCGCGAGCTTTTGGGTTCTCTATTCAGTTCGTTAATGGTTTAATGCGCAACCAGCGTGTCTGATCGGCAGAAGAGCGACGACGCCAAAATCTCCGGTAGCCTGCGCGTCAGGGGCCTTGGCCATGGGGGGATCCAAGAGTAAACCCAAGGATGTTGGCCAACGAACCCGCAGCCTCGAAGGCAACCTCAGCTCTGGAGGAGGAGCTGGCGGCCATTACCTCAGCTCCAATCAACAGTCATTAACACCCAATCGTAGTCCTAATATAGATGGAGGTCTGGGTGGCAATCAGCCCATGACCAATACCCCAGAGCTGGCCCTGTTTGGAGGTGTGGACAGTAATCCTGTCACTTCTCCCAACAGAATCACACTAGCAGGAGGTGTGACAACCTTCGTGGCCTTGTATGACTATGAGTCTAGAACGGCCTCAGACCTGTCATTCAGGAAGGGTGAACGCCTCCAGATAGTCAACAACACAGAAGGCGACTGGTGGCTGGCGCGCTCCCTCACCACCGGAGAGAGCGGTTATATCCCCAGCAATTATGTTGCTCCATCTGACTCCATCCAGGCAGAAGAGTGGTACTTTGGCAGAATCACTCGCCGCGACTCCGAGAGGCTGCTGCTAAGTTTAGAGAACAGGAGAGGGACTTTCCTGGTTCGAGAGAGTGAGACCACCAAAGGTGCCTACTGTCTGTCGGTGTTGGACTATGACAACACGAAAGGGCTGAATGTCAAGCACTACAAGATCAGGAAGCTGGACAGCGGAGGCTTCTACATCACATCCCGCACGCAGTTCAGCAACCTGCAGCAGCTCGTCAACCACTATCGCAAGCATGCTGATGGGCTGTGTCACAGTCTATCAGAGGTCTGTCCGGTGCTGAAGCCTCAGACTCAGGGCTTATCCAAGGATGCCTGGGAGATCCCGAGAGACTCCCTCCGCCTTGACCTCAAGCTCGGACAGGGCTGCTTCGGAGAGGTCTGGATGGGAACATGGAACGGTACAACACGGGTGGCGATAAAGACTCTGAAGACAGGCACCATGTCCCCTGAGGCCTTCCTCCAGGAAGCTCAGGTCATGAAGAAGCTGAGACATGAAAAGCTGGTTCAGCTATATGCTGTGGTGTCCGAGGAGCCCATCTACATCGTCACGGAGTACATGGGACAAGGTAGCTTACTGGATTTCCTGAAAGGTGACATGGGCAAGATGCTCCGCCTCCCCCAGCTGGTGGACATGGCCTCACAGATTGCTTCGGGGATGGCTTATGTGGAGAGGATGAACTACGTGCACAGAGACCTGCGAGCCGCCAACATCCTGGTGGGAGATAACCTGGTTTGCAAAGTGGCCGACTTTGGTCTGGCTCGCCTCATTGAGGATAATGAATATACTGCCAGGCAGGGAGCCAAGTTTCCCATCAAGTGGACCGCTCCTGAGGCTGCTCTGTACGGCCGCTTCACCATTAAATCTGACGTCTGGTCATTCGGGGTCCTGCTGACTGAACTGGCCACCAAAGGCCGAGTTCCCTATCCAGGTATGGTGAACCGGGAGGTGTTGGACCAGGTGGAGCGGGGCTACAGGATGCCGTGCCCAGCAGAGTGCCCTGAATCCATGCACGAGCTGATGCTGACCTGCTGGAGGAAAGAGCCAGAGGAGAGGCCCACGTTCGAGTACCTGCAGGGCTTCCTGGAGGATTACTTCACCTCCACGGAGCCTCAGTACCAGCCGGGAGAGAACCTGTAACTGGGCTGCACGTGGAAATGTGCATGCGTCATGCATGTGCAAAACTGAGCATGCGCATCTAATACAGAGTGCATGGACATGGTATGTGTGTGAGGGttatgtgtgtacagtataacGGGGCAGAAAGCCGACTGCATTCTGAGTACAGTCAGTAACTCTGAGGAGTATCAGTGGGACATCCGATCCGACCAATCTGCAAAATTTCAGTTCCTGCCTCTTTCCAAAGTCATTGTCATGCTCTCCAACGTGTCAGCAGCTCTGAGGCAATGTTTGTCAAAGTAAAAGACTAAACTGTGGTATTATTTTAGGGTTTGTCATACAGTACtgtgttattttgtcttgtcCGTGAAATCAACACCCTACACAGCCAAGCCGGTTTTTCTACCTTCCTAGTGTTTTTAAGGTGGCCCTAATGATACACATTTCCCATGCACTTTTCCTTTGTTAACTCACCTAGTTTGCCAGCTTCGACACTGCAATTGACCCCAGACTATGACTATGTAAAATACTGCAGATGGGTCAAACATGGGAGTTCAGAGAATAAATGTTGGATATAAGCGTT

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639096.1 lncRNA downstream 455 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 39002 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 42256 8704391 ~ 8704711 (-) False LOC120559289
TU64266 lncRNA downstream 92648 8611698 ~ 8654319 (-) False G48128
TU64434 lncRNA upstream 288700 9077075 ~ 9088743 (-) True G48255
TU64476 lncRNA upstream 422549 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 493921 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 496542 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 590625 9379000 ~ 9386915 (-) True LOC120558858
XM_039799324.1 mRNA downstream 3939 8716760 ~ 8743028 (-) False mical1
XM_039799323.1 mRNA downstream 3939 8716760 ~ 8743028 (-) False mical1
XM_039799322.1 mRNA downstream 3961 8716760 ~ 8743006 (-) False mical1
XM_039799320.1 mRNA downstream 3961 8716760 ~ 8743006 (-) False mical1
XM_039799321.1 mRNA downstream 3961 8716760 ~ 8743006 (-) True mical1
XM_039800982.1 mRNA upstream 4159 8792534 ~ 8841006 (-) True kcng1
XM_039800983.1 mRNA upstream 4159 8792534 ~ 8805859 (-) False kcng1
XM_039800986.1 mRNA upstream 61535 8849910 ~ 8875122 (-) True nfatc2a
XM_039800984.1 mRNA upstream 61535 8849910 ~ 8873128 (-) False nfatc2a
XM_039800985.1 mRNA upstream 61535 8849910 ~ 8873127 (-) False nfatc2a
TU64005 other downstream 559416 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 640772 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 860117 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1248165 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1259907 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 902155 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 919956 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1236619 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1854344 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3100566 11888941 ~ 11891046 (-) False srxn1

Expression Profile