RNA id: XM_039799336.1


Basic Information

Item Value
RNA id XM_039799336.1
length 4845
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120558364
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17671661 ~ 17682357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGCGGCAGCTCAAAGCCCGGATGGAGCAGCCATTGGGGAAGTGTAGTACAGGGCTTTAACGTAACTGAGGAGGGCTCTCTCTCTGGAATAATAAAGACAAAGTAAAAGGCGACCGAGGGCAGAAATATTCAAGCACCGAAAGGTCCATTCGGCGACACATAGCTAACGTTTACTTGAAAACCTGTGCCAGGACTTGACTGCTTTCGGACACAGTATCCGAGGCGACAGACTTGAGCTGTGGAAGTTGGGATACGTGCTCACAGCGGAAAACATACAGCTGAGGCTGCGCTACAACTACTAGCCACACGCTAAGCGGCATAATTAGCCACATAGCTAACTGTAACTGAGCTGTGAACTTGCTTTCAAATCACGGGGCTTGAAATACAGTCACAAGCTCAGGCTCTGTGAGAATCCAGGGACTTGCTTAATGAATTATGTCTGCCACAAGCATTGACCCTCAGAGATCAAAGGGACAAGCATCTAAAGTGCAAAATGGTTCACTGCATCAGAAGGAGACTGTCCATGACAATGACTTTGAGCCATACCTCACTGGTCAATCAACACAGAACAACAGCTACCAGTCTATTACCGACCCCTACCTGTCCAGCTACTATGCCCCCTCCATTGGATTTCCGTATCCCCTCAGTGAGGCTCCCTGGTCCACAGGAGGGGACCCCCCTATTCCATACCTCACCCCCTATGGACCCTTGAGTAATGGAGACCATCACTTTATGCCAGACACAGTGTTTGGCCAGCCGGGGGGTCTGGGAAGCAGCATCTACCCCCACAGGTTTAATTTTTTCCCTGAAAACCCTGCTTTCTCTGCTTGGGGCACAAGTGGCTCCCAGGGCCAGCAGACTCAAAGTTCAGCATACGGTGGCAGCTACAGCTATCCCCCCAGTTCTCTGGGGGGCACCCTGGTGCCTGATGGTCAGACAGGCTTTCACAGTGACACCCTCAACAAGGCCCCCGGTATGAACAGCCTGGAACAGGGTATGGTTGGCTTGAAGATCGGAGGGGATGTCACTGGCCAGGGGTCAGGAGTCAAGGCCGTGGGATCAGTTATTGGTGGACCTGTGGTGGCAGCCACAGGGAACGGAGCCACGCCTATTGGAATGCCACCACCCAAACCCACCTCCTGGGCAGCCATTGCCAGCAAGCCTGCCAAACCGCAGCAGCTGAAAGCTAAGGTGAAGCCAGGGATGCCCAATCCAGGGGGAGCTCTTCCCCCACCACCCATCAAACACAACATGAACATCGGGACCTGGGACAAGGGCCCCGTGACTAAAGTAGCCACAGCTCCACTGCAGCAACAGCAGCCTCTTGGCCTGCCTCATGGCATGCCACCTCTAGCCTCCATGCAGCAGGGACCCATGCAGCCCCCACCTCCCCAGTCTTTGTTGCAGCCCCAGATGCAGCCTATGGCCTTACAGACCCACCATCACCAGCACCATCAGCCACCACCTCAGCCCTACCACAACCACACCCAGCCTCCACAACCCCAGACCCGTTGGGTTGCCCCACGCAACCGTAACCAAGGCTACGGGCAGGGTGGCCCTGGCCATGACGGTTGTGGTGTGATGGGTATGGTTGGTAGTGGGAACAGTGGTCCTCAAACTTCTGCCAGCCAGGGACCTGGCGGAGAGTCCCACCCAGTGCTGGATAAGCTGCGTGCCTCCCATAGCTACAACCCCAAGAACTTTGAATGGAACTTGAAGAATGGACGTGTTTTCATCATTAAGAGCTACTCTGAGGACGATATCCATCGCTCCATCAAGTACTCCATCTGGTGCAGCACGGAGCACGGCAACAAGCGGCTGGACTCAGCCTTCCGGGCCATGAATGCTAAAGGCCCTGTATACCTTCTGTTCAGTGTCAATGGCAGTGGTCATTTCTGTGGTGTGGCAGAGATGCGTTCACCAGTGGACTATGGCACCAGTGCTGGTGTATGGGCACAGGACAAGTGGAAGGGCAAGTTTGACGTGGACTGGTTGTTTGTTAAGGACGTGCCTAATAGCCAGCTGCGCCACATCCGCCTGGAGAACAACGACAACAAGCCAGTGACCAACTCGCGTGACACCCAGGAGGTTCCTCTGGAGAAAGCCAAGCAGGTGCTCAAGATCATCGCCACCTACAAACACACCACCTCCATCTTTGATGACTTCTCCCATTATGAGAAGaggcaggaagaggaagaggaggtgcGCAAGACTTTTGAACCTTCTCCGATACAGAACCGCTCTCGGTTGGATCAGgagcGCCAAAACAGGAATAAACAATAGAAGACATTTATCCTTGGCTTGATCAACAGTTACACTAGGACTTTTGATTTAAGAGACAGAAGAATATGAAAATGCAACCAAGTCcttcatttttttctatttaatcCTGGTGAATCTCTGCCATTGTTGAGACTTGTGCTTTTTGTGCCCCATGTACCACCCACTTCTTGTGCAGGGATAACAAGCTGATTTAATGTATTACCTAGCCACCACCACTTtagttcagtgtttttttttttttttttttatatatatatttttcttcctGTTCCATCTCGTACTCTTCTCTCACCAGACTGGTTTTCTCTCTCCTGCCCCGACCACCACCTCTTTCCAATTGAATCAGGGTTTGACTGCaccatggagaaaaaaaaatctgccacTTTATATTTCAGTACAATCAGGAACGGATGTGTCCTGCCCCTATTTGTCCATTGGGGGGCAACATTGCCATGCTTCAGAGGTTTAACTGTGCCAACAGGGTTGGAGGATCCCAAATGCGTTGTCGGACTTGGAGCTGTGCGAAAATAAAACTTCAATGGTttatctatttttcattcagatCGACAAAATCTCTATTTTTTGGCTTACTACTGACAATTTTCATTTCAGAAACCTGATTTCTGGAgccttaatgttttttttttttctttttctaattaTTGATGACTTCTCAAAAGAACTGCTCAAACAGTGACACTGCTGGAGAAATCAGGGATAGTGTGAAGTCACAAGGGACTCAAGACATTTCTGAGGAGGAATTGCAAAGGCCTCTGGGAAAAGAAATAATGGATGTGTCCTCCACAACCAGAACTCTCACCATTTAAGTCAAAAATTGTACTATTGACGTCCCTTAAACCCCTCTGctttgctttcttttttatgtttgtcttgaggtcttttgtatgtttcatCAGGAGATTCTGCTTGTGAACGTAACCCAGTCTAAGAGAATTGTCGCATCCaccattttaaattgttttataaTCAGAAATGTCATTATGTAACCGCTACATTGAATGAATTGTTGCTTTTGCGTTTTTCTTTCCACAAAATGGGGGGGAGGGTTCGCATATTTGTCCATTCACCATCATTCTGTCTTAAtcctctgttttttgtttggtttttcctCAAATTAGGTTTATCATGTTGGTCGTAATGCTAAGCTTTAACGTAGGAGCCTATATATTCATGGAGAAAGCCTAAAAATGTATAACCTAAAAATTAATGTAACTGATTTACTATCgagtaagaaaaaaagaaaaaggaaatgtggtttctgtgtgttttttggttgTTGCAAAAAATAGTTTGTTCTAGACTGAAACCATTGATTATGATACAGTAAATTACTTTCAGGTATGTCAATGGAAAAAAGATTGGatattaaaaaaactaataGATGCGTATGCCCTTGCATGGCAAGCTGCAATATAGGAAGTCAATGTTAAACTATTCTCTGTCCTGCAGCTTTTCTGTGAGACTGGTGATGTTGTTTGGTCCTTTAAAGGACGGTGTCCCCTCCCTGTTCTCGTTTCAGAGCATTCAAAGCCAGaatgcagtttatttgttaGTGAGCGTTTGAGATCAGCAGGTTCTCTATCCTCTTGATTACTTTGAAGCGGTCAGTTCAGTATTTTGTGGATTGTGAGGTTACCATGATGCAGAGAGGAATGCTGCTAATCGACACGGCTGTCTCTTTCATGTTAAGGGATCTTTTCTCATTTTGGCatattgtgtatttgtgtaagAGTTTAAATCTGATGTCGCTTCATGGTAACCTGATCAGATATAGCCAGATCCCAATCCCTAATTTTCTGTTTGGAATATTTGAACTGAAACGGATATTGACAGTTGTGGCCTGAAGTCATTCACATTAAGTTGTTTGGTCTTTTCAGATTATGTTAAACGATGCATCTGATCTATTTTGATTCTGTCAAAGCTTAACCCCGTTGTTACTTTGAGATGGCAGAAGTTCTGCACTTTGCTGAGGTAACTCCGAGTATGAACCGTATGCTTCGCAACTGTATTTCCAGATGTGTGAAGCTGCGTTGTATTTTTTTACCTGGCCAGTGTAGAGAACTGACCTCTAACAGGATCCTTTCGTCATCTCCTCACCTTTTTACCTGCACTAAACAATAGCTAGGTAGATCCAAGCAATACGGTGAAGGCCCTTCACATGTTTGCCTTCACCGACACCGCTCTCTCCAACCAGCGTACAGAGTCATGGGCAGGTGAGAAGCTATAGGATGCCACCGAAGACTGAGTCACAGCCATCTTTGCCTCAGGAAGCATGAACTGGTTGTGACTGTAGTACAGGGCTTACGTGCACGTTATTGATAACTGTCAGAAGATGTTAGTTTGCAATAGAGGGATGTCAGGTTAGCTATGAAAGTATATGTATCAACACTACAAAAGGATTAATGACATGAAATACTAAATAAACATTGATTATCTTATAGACCACAGTTGTAGTGGGCATAACTTGTTCAAAAGATCTATCTTGGTTTTTCTTTATAGAAGAAATCAAGCCTTAATAAACTGTCCATTCAGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67718 lncRNA downstream 200986 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 420387 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 466032 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 478026 17190077 ~ 17193635 (-) True G50567
TU67605 lncRNA downstream 518234 17152449 ~ 17153427 (-) False G50553
TU67797 lncRNA upstream 691 17683048 ~ 17683519 (-) True G50709
TU67884 lncRNA upstream 100331 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 292398 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 292398 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 321317 18003674 ~ 18024302 (-) False samd10b
XM_039802019.1 mRNA downstream 55454 17614435 ~ 17616207 (-) True bhlhe23
XM_039799566.1 mRNA downstream 99460 17547203 ~ 17572201 (-) False dnah12
XM_039799565.1 mRNA downstream 99460 17547203 ~ 17572201 (-) True dnah12
XM_039799567.1 mRNA downstream 103582 17547203 ~ 17568079 (-) False dnah12
XM_039799563.1 mRNA downstream 125355 17543072 ~ 17546306 (-) False asb14b
XM_039799340.1 mRNA upstream 7598 17689955 ~ 17736828 (-) False nkain4
XM_039799339.1 mRNA upstream 7598 17689955 ~ 17736826 (-) True nkain4
XM_039800023.1 mRNA upstream 152723 17835080 ~ 17886333 (-) False zbtb46
XM_039800019.1 mRNA upstream 154616 17836973 ~ 17895082 (-) False zbtb46
XM_039800020.1 mRNA upstream 154616 17836973 ~ 17895082 (-) True zbtb46
TU67071 other downstream 1387805 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2817844 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2817844 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 3137056 14532124 ~ 14534605 (-) True G49766
XR_005639168.1 other downstream 3526439 14140380 ~ 14145222 (-) False LOC120558710
TU67800 other upstream 5758 17688115 ~ 17689760 (-) True G50712
XR_005639183.1 other upstream 157187 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1198008 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 2017416 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 2018973 19701330 ~ 19701451 (-) True LOC120559928

Expression Profile