RNA id: XM_039799340.1


Basic Information

Item Value
RNA id XM_039799340.1
length 3765
RNA type mRNA
GC content 0.43
exon number 6
gene id nkain4
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17689955 ~ 17736828 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccccctccataCACACCGGCTCGCAACCACCCAACCAGCCAGTCACCTCAAGTGCGACCGGGCCGGCAGGAGCGGAGGCAAACAAACAGCCGGAGCAGCCAGGGCGATCCTGCCGCGGGGGTTTGGCTCAGCAACTTAGACACACGGAGCAGAAGAGGAGAATGGGACGCCGGTGCTTGGATCAGGACTGAGTCTGGTCGGCACATTGAGAGCTCCTTCGACCCGTTTCCAAGTCCTTTTCTCCCCGGATCAGAGTCACGTCTTCACCACTGACACAATGGGCTGCTGCAGCGGACGGTGCACTCTTATCTTTATTTGCACTTTACAGTTGGTGTTGGCATTAGAAAGACAGGTCTTTGACTTCCTGGGTTACCAGTGGGCCCCAATCCTTGCCAACTTTTTCCACATCATCATGGTCATCCTCGGCCTTTTTGGCACCATCCAGTACCGGCCGCGCTACATTGTGGTGTACACAGTATGGGTCGCTCTGTGGGTGGCCTGGAACGTCTTCATCATCTGTTACTACCTGGACGTAGGCGGCCTGTCCAAGGACAGTGACCTGCTGACATTTAACATCTCCGCCCATCACTCTTGGTGGAGCGAACACGGGCCGGGCTGTGTGAGGAGAGAGATGCCGGAGGCTCCAGGGGTCCGCACAACAGAGAGCCACTCCTACATCACTGTCATGGGCTGCCTCATGGATTACCAGTATATTGAGGTTGTGCACAGCGGCACACAGATTCTCGTTGCTCTCCTGGGCTTCGTGTACGCCTGTTATGTTGTCAGCGCTATCACTGAGGAGGAGGACAGCTGTCTACGTAAATAAGAGAGCGTCCAGCGGGGAGGTGGCACAGCAAATTCCCACGGAGACAAAATGGCTGTTGTGACACAAACATCCAGTTCAATGGGGCACGCCAGACATTCCTCCCCTTCTCGATTTCAGTACTTTAAACATGTCATTTACTGGTGTACTGCCCAGAAAAGCCAACACTCCGTTAGGGTCCATTGTTTTCCAGGGAGGGATGACGGGTTCTGGGAAAAGGGGGGATTACAGTGCAACAAAGCCTCATATTGTGTGTTTAGGGAAGTATCAGTCATTTTCTTTGTATTGAGTTCTCTGCTGAGGTCCTGTGACCTGCCCATTCTTGTTTAATACTCCCCAAGACTGTATagaatacagtatataaatacaTTGTGTATGTAATCAGGGACTGCCCAGCATTCCCAGTCTGTGGTACTGTGTCTTAGAGGACTCAGTGATTTAGCATGTTATTGCTGGTTTGGCTCAAATCTTGGCCGGAGGGCTGAATTACAGTGGAGCCCATGGAATGAGCTATTGTGTGCTCATTGCCTGTTTACTTTAGGCCAGGATCTGTGTGCATAAATACACAAGCAAACCAGGAAGAGGCAGGGGAGTTGAGAGGTAGAGGGAGGGGATGAAACAAAAGCACCAAACCTACAGGGGCATCtgtcaaaaatagaaaatgtaaataatgaaacaagagggggggggagaattTTAGATTTAGAGTTTGTAATGCGAACTATCAAGAATGGAAAAGAGCGTTGAGCGTAAGAGGTGTTAAAAAACAAGGAACGGCAAGTCTTACTTTTATTTCTGGAGTCTTTATTGTTATCACTATTTTCACCAACAGCCAAGTAAGTATTTCTGAAGTGTCAGATGTTAGAAGACTGGCTGAAAGCTTTGTTTACCCATCAGTTCTTCTCCTGTAACTACTGACACGTCGGGCTGCTGACATGGGTGATCATTACACACGCTCAAGTGAAGGTtacacagcatatttttaactTCAAGAAAACAATAGAATGTTTCCCTATTCACATTGCATACAACAGCAATGAGTTGTATGGCTATGGTCTTCAGTGTAGAAGTAGCGGCCTGTACCAGAGTGAAGCACAGCATTGTCTCCTGTCACTTCACCAGTGTAGATTCTCAATGGTGATTGTCTCAGTTGTGATTGTTTTATAGCATGTTTTTTACAGGGTTTGTATTGTAATTATGTGTATAACATAAAGAAATTACAAAATAGGAAAACTGATGTCTTCTGGCTGTATATGAGCTGGTTAAACAGCAACTGAAAGCTTTTGCTGAGTCGTTTCTTactcagatttattttttatctgacCGAGCaacatcacacatttttatttaggcAAATACACACACGTGGGTCATGTCTCCTATACTGATTGCTAGCACCTAATGTTAAAAAGTACTAAAGTCAGAGCCCCTGTTGCCTTACTGGTTGTGTGAATCACTACTGCTCTCTGGTGTTTAAAGTGTTCATGTACAAGTTGCAAGGCTACTGAGTTTCTGCTACAGGGTCCATAAATCATGTTTGTCTTAAATCTATTTTTTGCAGTAAATCTTAAAATATTATGTTTTAGCTTGGTAATTGTCATGTAGGAGGAGTAGGCGCTTTGCCCTGCTTGTTTCAGTGTTACACTTGGTCAGTGTTTGATTTACACTGTGGCTTTCAGGGGAGCCCTATTTTCGGGGGGTTGGAGAGCTACTGTACACATGCAAAAATACACTATCAATACATTTCCATTCATTCAGAGAATATTTAGCCTGGgacaacaaagaaaaaatagtgcaatgtttgttttttatccaCCAAGCAACAATAAAAATGCCTACGCACAGTGGACAGGCAATGGTTTGTTAAACAGACCAAAGTTGCATCCCATGACAATTATGAACATGTCCACAGCCTCAAATGTTGGTCTTACGGAAAACATATTCCAAAGAAAAAAGTCAATTCCCAACACACACTTTTCACCTCTGCATGATTTATTTAAGAAAAGTCAACCTTTCAGCAACATAACTTTTcctgttatttatttcaggaacCCTAAGATATAGGGCAGGGGGGAGCTCATGTCATTTTCAGGGGAGCCAAGCTCCCTGTAGCTCCGCCTTATTTCAAACCCTGCACTCCGTCCTTTTCTTTATAATTTAGGTCAAGATCAGTTTTTGCCCACTACATTTCAATCCAACACATTTTCAGTATACTATTTGTCTGACTACTATGTTTCTTGTGCTAAGTTTGAAACTGTCTGCTTAGCTATTTTTGGGGAATCAAAAGAGTTGTGAACAAAGGAGTTCATTCTGTTGTTTTCAGTCATTTTGTCAGCGCCTAAGAATATCCTGCTGCGTGTCAGATTCCTTTGTGATATTAGATGTTCTTCACTGCCATATAGACAGTCCACAAATTGTTATGATTCTGATAAATCATATGACCACTTCTGCCGGCTAATTTTGATTTGATTGGTCACCTCTTTATTTCCAAGATACAATAATTTGTCTTTATGATTTAAAGTTTACACACCCCTGGAATGGCTAACTGGTGTGTGGGTTAGTAAAAACACAAAGCACCTCATATTGTAACATAATCAGTATTGGTAGTAAATGCTACTATGTAAAAACTAGTCTTCCTCTCAGTGCAATACAGCCTCTTCCTAAACCCCCAGTTACTGGAATTAGTTGAAACCTGTTACTAGTGTGAGTATATGTGCTAGTCTCCATTGAAAAAGATTCCACGTGTTTGTAGATAATTCTTTTTCTTTGTATAGAAAGTGTaaaaggtcttttttttttttttatctctcttcTATTTTGTGTCCTGTGTTGCCTCAACCCCTTGTGACCTGATTGTGTAAACCTATTTATCCAGAAATGTGCTTTGTGTTCATGTAAATAGGTGTTTGTTAATAAAAGAACATGCTCTTGTAATGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67797 lncRNA downstream 6436 17683048 ~ 17683519 (-) True G50709
TU67718 lncRNA downstream 219280 17470207 ~ 17470675 (-) True G50647
TU67638 lncRNA downstream 438681 17250650 ~ 17251274 (-) True G50574
TU67617 lncRNA downstream 484326 17203747 ~ 17205629 (-) True G50561
TU67624 lncRNA downstream 496320 17190077 ~ 17193635 (-) True G50567
TU67884 lncRNA upstream 45860 17782688 ~ 17786360 (-) True G50779
TU67914 lncRNA upstream 237927 17974755 ~ 17991671 (-) False samd10b
TU67916 lncRNA upstream 237927 17974755 ~ 18101572 (-) False samd10b
TU67915 lncRNA upstream 266846 18003674 ~ 18024302 (-) False samd10b
TU67928 lncRNA upstream 303581 18040409 ~ 18041404 (-) True G50803
XM_039799336.1 mRNA downstream 7598 17671661 ~ 17682357 (-) False LOC120558364
XM_039799335.1 mRNA downstream 7598 17671661 ~ 17682357 (-) False LOC120558364
XM_039799334.1 mRNA downstream 7598 17671661 ~ 17682357 (-) True LOC120558364
XM_039802019.1 mRNA downstream 73748 17614435 ~ 17616207 (-) True bhlhe23
XM_039799566.1 mRNA downstream 117754 17547203 ~ 17572201 (-) False dnah12
XM_039800023.1 mRNA upstream 98252 17835080 ~ 17886333 (-) False zbtb46
XM_039800019.1 mRNA upstream 100145 17836973 ~ 17895082 (-) False zbtb46
XM_039800020.1 mRNA upstream 100145 17836973 ~ 17895082 (-) True zbtb46
XM_039800018.1 mRNA upstream 100145 17836973 ~ 17895081 (-) False zbtb46
XM_039800017.1 mRNA upstream 100145 17836973 ~ 17893573 (-) False zbtb46
TU67800 other downstream 195 17688115 ~ 17689760 (-) True G50712
TU67071 other downstream 1406099 16281044 ~ 16283856 (-) True G50217
TU66613 other downstream 2836138 14845338 ~ 14853817 (-) False G49845
TU66615 other downstream 2836138 14845338 ~ 14853817 (-) False G49845
TU66513 other downstream 3155350 14532124 ~ 14534605 (-) True G49766
XR_005639183.1 other upstream 102716 17839544 ~ 17886333 (-) False zbtb46
TU68271 other upstream 1143537 18880365 ~ 18886753 (-) False LOC120558627
XR_005639384.1 other upstream 1962945 19699773 ~ 19699894 (-) True LOC120559929
XR_005639383.1 other upstream 1964502 19701330 ~ 19701451 (-) True LOC120559928
XR_005639385.1 other upstream 1969851 19706679 ~ 19706800 (-) True LOC120559930

Expression Profile